Papers matching “transcriptomic data analysis” 56
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AtlasOT - The Fused Unbalanced Gromov-Wasserstein for Multimodal Integration of Disease Atlases2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kai Peng, Mayra L. Ruiz Tejada Segura, Barthélémy Caron, Christoph Kuppe, James Shiniti Nagai, Ivan G. Costa
0citations -
Utilizing gene co-expression networks with the rat kidney TXG-MAPr tool to enhance safety assessment, biomarker identification and human translation2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Steven J. Kunnen, Giulia Callegaro, Jeffrey J. Sutherland, Panuwat Trairatphisan, Hugo W van Kessel, Lukas S. Wijaya, +11 more
1citations -
Multi-omics phenotyping of the gut-liver axis allows health risk predictability from in vivo subchronic toxicity tests of a low-dose pesticide mixture2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Pesticide Exposure and Toxicity Open access
Robin Mesnage, Maxime Teixeira, Daniele Mandrioli, Laura Falcioni, Quinten R. Ducarmon, Romy Daniëlle Zwittink, +7 more
5citations -
KIF23 regulation by miR-107 controls replicative tumor cell fitness in mouse and human hepatocellular carcinoma2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology MicroRNA in disease regulation Open access
Sanchari Roy, Carolin Lohr, Rossella Pellegrino, Mihael Vucur, Michael T. Singer, Veronika Buettner, +7 more
0citations -
Towards biomarkers for outcomes after pancreatic ductal adenocarcinoma and ischemic stroke, with focus on (co-)morbidity and aging / cellular senescence (SASKit): protocol for a prospective cohort study
Larissa Henze, Uwe Walter, Hugo Murua Escobar, Christian Junghanß, Robert Jaster, Rüdiger Köhling, +9 more
0citations -
Long Non-Coding RNAs in Response to Ebola Virus Vaccine-Induced Immunity2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access
Izabela Mamede, Thomaz Lüscher Dias, Isabelle Franco Moscardini, Barbara Marinho, Fernando Marcon, Thiago Dominguez Crespo Hirata, +11 more
0citations -
Axonopathy and altered synaptic development in early hippocampal epileptogenesis of Dravet syndrome2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Epilepsy research and treatment Open access
Nikolas Layer, Peter Müller, Maya Ayash, Friederike Pfeiffer, Meret Saile, Fabian Klopfer, +7 more
6citations -
GRIDGENE: Guided Region Identification based on Density of GENEs – a transcript density-based approach to characterize tissues by spatial transcriptomics2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Ana Marta Sequeira, Marieke E. Ijsselsteijn, Miguel Rocha, Jessica P Roelands, Noel F.C.C. de Miranda
3citations -
Aberrant and Ectopic Cell Populations of the Fibrotic Pushing Border in Restrictive Allograft Syndrome after Lung Transplantation2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Transplantation: Methods and Outcomes Open access
Lena Maureen Leiber, Leonard Christian, Lavinia Neubert, Jannik Ruwisch, Hande Yilmaz, Edith Katharina Plucinski, +22 more
2citations -
Genetic modulation of immune gene co-expression in the aged mouse hippocampus by the Apbb1ip locus2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neuroinflammation and Neurodegeneration Mechanisms Open access
James E. Tomkins, Aditi Methi, Gerard A. Bouland, Birte Doludda, Kitty B. Murphy, Jeremy A. Miller, +2 more
1citations -
Secondary growth in the tomato stem is suppressed by the flowering regulators FUL2 and STM32026 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant Molecular Biology Research Open access
Kailash Pandey, Amponsah Preko Appiah, Robin van Velzen, Iris E. Zahn, Ellora Basu, Gerco C. Angenent, +2 more
0citations -
Cross-Ancestry Investigation of Venous Thromboembolism Genomic Predictors2022 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access
Florian Thibord, Derek M. Klarin, Jennifer A. Brody, Ming‐Huei Chen, Michael G. Levin, Daniel I. Chasman, +82 more
4citations -
Cell DiffErential Expression by Pooling (CellDEEP) highlights issues in differential gene expression in scRNA-seq2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yiyi Cheng, Toby Kettlewell, Ross F Laidlaw, Olympia M Hardy, Andrew McCluskey, Thomas D. Otto, +1 more
0citations -
Mixed acid fermentation products from Lachnospira eligens counteract myotube atrophy2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Sophie Lecop, Edwige Piron, Audrey M. Neyrinck, Axelle E. Loriot, Sarah A. Pötgens, Raphaël Helaers, +12 more
0citations -
Kynurenine and NAD+ Pathways are Associated with Macrophage Content and Polarization in Carotid Plaques2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Charlotte J. Teunis, Lobke F. Zijlstra, Johannes H.M. Levels, Kasper Tore Vinten, Maria M. Trętowicz, Barend M. Mol, +9 more
1citations -
Longitudinal dynamics of human B-cell response at single-cell level in response to Tdap vaccination2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology T-cell and B-cell Immunology Open access
Indu Khatri, Annieck M. Diks, Erik B. van den Akker, Liesbeth E.M. Oosten, Jaap Jan Zwaginga, Marcel J. T. Reinders, +2 more
0citations -
Single-cell multiome uncovers differences in glycogen metabolism underlying species-specific speed of development2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Alexandra de la Porte, Julia Schröder, Moritz Thomas, Johanna Geuder, Michael Sterr, Leslie E. Sanderson, +5 more
1citations -
Dynamic multi-omics and mechanistic modeling approach uncovers novel mechanisms of kidney fibrosis progression2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Chronic Kidney Disease and Diabetes Open access
Nadine Tuechler, Mira Lea Burtscher, Martín Garrido‐Rodríguez, Muzamil Majid Khan, Dénes Türei, Christian Tischer, +8 more
0citations