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SCHNEL: scalable clustering of high dimensional single-cell data2020 Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Tamim Abdelaal, Paul de Raadt, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders, Ahmed Essam Mahfouz
9citations -
Identification of kidney cell types in scRNA-seq and snRNA-seq data using machine learning algorithms2024 Heliyon article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Adam Tisch, Siddharth Madapoosi, Stephen R. Blough, Jan Rosa, Sean F. Eddy, Laura H. Mariani, +9 more
3citations -
Flow cytometry and machine learning enable identification of allergenic urban tree pollen2026 Atmospheric measurement techniques article Medicine Allergic Rhinitis and Sensitization Open access
Sarah Tardif, Maria Raquel Kanieski, Gauthier Lapa, Grégoire Bonnamour, Rita Sousa‐Silva, Isabelle Laforest‐Lapointe, +1 more
0citations -
Integrating Functional Genomic Descriptors into Explainable Machine-Learning Models for Cross-Aquatic Species Prediction of Metal-Containing Nanomaterials Ecotoxicity2026 Environmental Science & Technology Letters article Environmental Science Environmental Toxicology and Ecotoxicology
Yunchi Zhou, Ying Wang, Willie J.G.M. Peijnenburg, Martina G. Vijver, Kmy Leung, Surendra Balraadjsing, +3 more
0citations -
Large language models for structured cardiovascular data extraction: a foundation for scalable research and clinical applications2025 European Heart Journal - Digital Health article Computer Science Machine Learning in Healthcare Open access
Wouter P M van der Loo, Viktor van der Valk, Tim van den Broek, Douwe E. Atsma, Marius Staring, Roderick W.C. Scherptong
4citations -
Machine learning-driven prioritization of lipoprotein(a) testing: model development and validation2026 European Journal of Preventive Cardiology article Medicine Lipoproteins and Cardiovascular Health Open access
Christophe A. T. Stevens, Fotios Barkas, Julia Brandts, Sunganani Kwilasi, Kanika Dharmayat, Amany K. Elshorbagy, +5 more
1citations -
Identification of Kidney Cell Types in Single-Cell RNA Sequencing and Single-Nucleus RNA Sequencing Data Using Machine-Learning Algorithms2024 Journal of the American Society of Nephrology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics
Siddharth Madapoosi, Adam Tisch, Jan Rosa, Sean F. Eddy, Abhijit S. Naik, Christine P. Limonte, +8 more
0citations -
Towards scalable estimation of plant functional diversity from Sentinel-2: In-situ validation in a heterogeneous (semi-)natural landscape2021 Remote Sensing of Environment article Environmental Science Remote Sensing in Agriculture Open access
Leon T. Hauser, Jean‐Baptiste Féret, Nguyễn An Bình, Niels van der Windt, Ângelo F. Sil, Joris Timmermans, +2 more
74citations -
SPiFOL: A Spectral-based physics-informed finite operator learning for prediction of mechanical behavior of microstructures2025 Journal of the Mechanics and Physics of Solids article Physics and Astronomy Model Reduction and Neural Networks Open access
Ali Harandi, Hooman Danesh, Kevin Linka, Stefanie Reese, Shahed Rezaei
18citations -
Deep learning–based molecular morphometrics for kidney biopsies2021 JCI Insight article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Marina Zimmermann, Martin Klaus, Milagros N. Wong, Ann-Katrin Thebille, Lukas Gernhold, Christoph Kuppe, +13 more
48citations