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Papers matching “research workflows” 915

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APE in the Wild: Automated Exploration of Proteomics Workflows in the bio.tools Registry
2021 Journal of Proteome Research article Decision Sciences Scientific Computing and Data Management Open access

Vedran Kasalica, Veit Schwämmle, Magnus Palmblad, Jon Ison, Anna-Lena Lamprecht

11

citations
Towards a scientific workflow featuring Natural Language Processing for the digitisation of natural history collections
2020 Research Ideas and Outcomes article Computer Science Handwritten Text Recognition Techniques Open access

David C. Owen, Laurence Livermore, Quentin Groom, Alex Hardisty, Thijs Leegwater, Myriam van Walsum, +2 more

8

citations
Research Data Management in Material Science and Engineering
2026 Zenodo (CERN European Organization for Nuclear Research) article Computer Science Research Data Management Practices Open access

Khalil Rejiba, Sang-Hyeok Lee, Sandra Korte‐Kerzel, U. Kerzel

0

citations
A Multi-omics Data Analysis Workflow Packaged as a FAIR Digital Object
2022 Research Ideas and Outcomes article Decision Sciences Scientific Computing and Data Management Open access

Anna Niehues, Casper de Visser, Fiona A. Hagenbeek, Naama Karu, Alida S. D. Kindt, Purva Kulkarni, +5 more

1

citations
Example dataset: Content Tracking and Verification in Galaxy Workflows with ISCC-SUM
2026 Zenodo (CERN European Organization for Nuclear Research) dataset Decision Sciences Scientific Computing and Data Management Open access

Maarten W. Paul

0

citations
Example dataset: Content Tracking and Verification in Galaxy Workflows with ISCC-SUM
2026 Zenodo (CERN European Organization for Nuclear Research) dataset Decision Sciences Scientific Computing and Data Management Open access

Maarten W. Paul

0

citations
Example dataset: Content Tracking and Verification in Galaxy Workflows with ISCC-SUM
2026 Zenodo (CERN European Organization for Nuclear Research) dataset Decision Sciences Scientific Computing and Data Management Open access

Maarten W. Paul

0

citations
Towards FAIRness using an Interoperable Research Data Architecture Developed within NFDI-MatWerk - RDA 2025
2025 Zenodo (CERN European Organization for Nuclear Research) article Computer Science Research Data Management Practices Open access

Yusra Shakeel

0

citations
Towards FAIRness using an Interoperable Research Data Architecture Developed within NFDI-MatWerk - RDA 2025
2025 Zenodo (CERN European Organization for Nuclear Research) article Computer Science Research Data Management Practices Open access

0

citations
A benchmark dataset and workflow for landslide susceptibility zonation
2024 Earth-Science Reviews article Environmental Science Landslides and related hazards Open access

Massimiliano Alvioli, Marco Loche, Liesbet Jacobs, Carlos Henrique Grohmann, Minu Treesa Abraham, Kunal Gupta, +22 more

57

citations
TraIT, Translational research IT bridging the valley of death in translational medicine
2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Decision Sciences Scientific Computing and Data Management Open access

Jan‐Willem Boiten, Rita Azevedo, Kees van Bochove, Marinel Cavelaars, Andre L.A.J. Dekker, Remond J.A. Fijneman, +7 more

1

citations
WOMBAT-P: Benchmarking Label-Free Proteomics Data Analysis Workflows
2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Advanced Proteomics Techniques and Applications Open access

David Bouyssié, Pınar Altıner, Salvador Capella-Gutiérrez, José M. Fernández, Yanick Paco Hagemeijer, Peter L. Horvatovich, +12 more

2

citations
A framework for reproducibly managing coupled research software and data assets based on shared transformation functions
2026 Patterns article Decision Sciences Scientific Computing and Data Management Open access

Patrick Kuckertz, Benjamin Fuchs, Julian Schönau, Hedda Gardian, Kevin Knosala, Eugenio Salvador Arellano Ruiz, +6 more

1

citations
Managing Big Data for Addressing Research Questions in a Collaborative Project on Automated Driving Impact Assessment
2020 Sensors article Computer Science Research Data Management Practices Open access

Francesco Bellotti, Nisrine Osman, Eduardo H. Arnold, Sajjad Mozaffari, Satu Innamaa, Tyron Louw, +6 more

13

citations
Making Reproducible Research Simple Using RMarkdown and the OSF
2020 Lecture notes in computer science conference-paper Decision Sciences Scientific Computing and Data Management

André Sergej Calero Valdez

4

citations
Workflows ingenieurwissenschaftlicher Forschungsabläufe - Auszug des aktuellen Forschungsstands
2022 Zenodo (CERN European Organization for Nuclear Research) conference-paper Computer Science Research Data Management Practices Open access

Tobias Hamann, Mario Moser

1

citations
Atomate2: modular workflows for materials science
2025 Digital Discovery article Materials Science Machine Learning in Materials Science Open access

Alex M. Ganose, Hrushikesh P. Sahasrabuddhe, Mark Asta, Tathagata Biswas, Alexander Bonkowski, Joana Bustamante, +48 more

44

citations
Atomate2: Modular workflows for materials science
2025 ChemRxiv preprint Materials Science Machine Learning in Materials Science Open access

Alex M. Ganose, Hrushikesh P. Sahasrabuddhe, Mark Asta, Tathagata Biswas, Alexander Bonkowski, Joana Bustamante, +46 more

8

citations
DataverseNL workflow presentations (Thema-bijeenkomst 27-1-2020)
2020 DataverseNL dataset Computer Science Research Data Management Practices Open access

Hanneke Theunissen, Christina Elsenga, Maureen Meekel

0

citations
Metadata practices for simulation workflows
2025 Scientific Data data-paper Decision Sciences Scientific Computing and Data Management Open access

José Villamar, Matthias Kelbling, Michael Denker, Tom Tetzlaff, Johanna Senk, Stephan Thober

4

citations
Connecting the general and particular in interdisciplinary urban research
2026 Nature Cities article Decision Sciences Interdisciplinary Research and Collaboration

Patrick Roberts, W. Christopher Carleton, Shira Yoshi Maezumi, CConUrb, Wiebke Bebermeier, Hilde Godelieve Dominique De Weerdt, +47 more

1

citations
The Three-Step Workflow: A Pragmatic Approach to Allocating Academic Hospitals’ Affiliations for Bibliometric Purposes
2022 Journal of Data and Information Science article Decision Sciences scientometrics and bibliometrics research Open access

Andrea Reyes Elizondo, Clara Calero‐Medina, Martijn S. Visser

5

citations
Designing a data access and integration workflow for medical data science: a use case of compiling a reusable data set for primary tumor discovery at MeDIC Cologne
2022 Zenodo (CERN European Organization for Nuclear Research) dissertation Health Professions Electronic Health Records Systems Open access

Julia Gehrmann

0

citations
Action Research on Enhancing Record Keeping with GenAI at The Salvation Army
2025 IEEE International Conference on Technology Management, Operations and Decisions (ICTMOD) conference-paper Engineering Robotic Process Automation Applications

Tyron Offerman, Manuel Mol

0

citations
BIEN : A biodiversity informatics ecosystem advancing open and reproducible workflows for plant observation, plot and trait data
2026 Methods in Ecology and Evolution article Computer Science Research Data Management Practices Open access

Brian Joseph Enquist, Brad L. Boyle, Brian Maitner, Cory Merow, Ben Carlson, Xiao Feng, +33 more

2

citations