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PROTEOBENCH, An open platform for comparing proteomics data analysis workflows2025 HAL (Le Centre pour la Communication Scientifique Directe) conference-paper Chemistry Advanced Proteomics Techniques and Applications Open access
Robbe Devreese, Caroline Jachmann, Bart Van Puyvelde, Holda A. Anagho, Witold Wolski, Henry Emanuel Webel, +39 more
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Brief Evaluation of Olink Reveal Proximity Extension Assay for High-Throughput Proteomics: A Case Study Using NIST SRM 1950 and Two Spike-In Protein Standards7citations
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Community-driven advances in computational mass spectrometry: The perspective of EuBIC-MS members2026 Journal of Proteomics article Chemistry Advanced Proteomics Techniques and Applications Open access
Dirk Winkelhardt, Julia Patricia Schessner, Sven Berres, Alireza Nameni, Armin Soleymaniniya, Ayla Schröder, +17 more
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ProteinCT: An implementation of the protein circuit topology framework2022 MethodsX article Biochemistry, Genetics and Molecular Biology Protein Structure and Dynamics Open access
Duane Moes, Seyedeh Elnaz Banijamali, Vahid Sheikhhassani, Barbara Scalvini, Jaie C. Woodard, Alireza Mashaghi
7citations -
Peer Review Report For: BioHackathon 2015: Semantics of data for life sciences and reproducible research [version 1; peer review: 2 approved]2020 University of Southampton peer-review Computer Science Research Data Management Practices Open access
Rutger Aldo Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, +68 more
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iSODA: A Comprehensive Tool for Integrative Omics Data Analysis in Single- and Multi-Omics Experiments2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Damien Olivier‐Jimenez, Rico J. E. Derks, Oscar Harari, Carlos C Cruchaga, Muhammad Asri Mohd Ali, Alessandro Ori, +5 more
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Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project2020 Journal of Proteome Research article Chemistry Advanced Proteomics Techniques and Applications Open access
Michael R. Hoopmann, Ulrike Kusebauch, Magnus Palmblad, Nuno Bandeira, David D. Shteynberg, Ling-jie He, +5 more
10citations -
Improving Identification of In-organello Protein-Protein Interactions Using an Affinity-enrichable, Isotopically Coded, and Mass Spectrometry-cleavable Chemical Crosslinker2020 Molecular & Cellular Proteomics article Chemistry Advanced Proteomics Techniques and Applications Open access
Karl A.T. Makepeace, Yassene Mohammed, Elena L. Rudashevskaya, Evgeniy V. Petrotchenko, F.‐Nora Vögtle, Chris Meisinger, +2 more
50citations -
The Association of Biomolecular Resource Facilities Proteome Informatics Research Group Study on Metaproteomics (iPRG-2020)2023 Journal of Biomolecular Techniques JBT article Chemistry Advanced Proteomics Techniques and Applications Open access
Pratik Dilip Jagtap, Michael R. Hoopmann, Benjamin A. Neely, Antony Harvey, Lukas Käll, Yasset Pérez‐Riverol, +4 more
12citations -
iSODA: A Comprehensive Tool for Integrative Omics Data Analysis in Single- and Multi-Omics Experiments2025 Analytical Chemistry article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Damien Olivier‐Jimenez, Rico J. E. Derks, Oscar Harari, Carlos C Cruchaga, Muhammad Ali, Alessandro Ori, +5 more
10citations -
#4547 IDENTIFICATION OF GLYCOSYLATED IGF2 IN HUMAN URINARY PEPTIDOME AND ITS ASSOCIATION WITH CKD2023 Nephrology Dialysis Transplantation article Biochemistry, Genetics and Molecular Biology Glycosylation and Glycoproteins Research Open access
Sonnal Lohia, Agnieszka Latosińska, Jérôme Zoidakis, Manousos Makridakis, Harald Mischak, Griet Glorieux, +2 more
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Conceptual design blueprint for the DiSSCo digitization infrastructure - DELIVERABLE D8.12020 Research Ideas and Outcomes article Computer Science Research Data Management Practices Open access
Alex Hardisty, Hannu Saarenmaa, Ana Casino, Mathias Dillen, Karsten Gödderz, Quentin Groom, +8 more
35citations