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Thermal Proteome Profiling in Zebrafish Reveals Effects of Napabucasin on Retinoic Acid Metabolism2020 Molecular & Cellular Proteomics article Chemistry Advanced Proteomics Techniques and Applications Open access
Niels M. Leijten, Petra A. Bakker, Herman P. Spaink, Jeroen den Hertog, Simone Lemeer
18citations -
Plasma proteome profiling identifies changes associated to AD but not to FTD2022 Acta Neuropathologica Communications article Medicine Dementia and Cognitive Impairment Research Open access
Rosha Babapour Mofrad, Carel F.W. Peeters, Lieke H. H. Meeter, Harro Seelaar, Marleen J.A. Koel‐Simmelink, Inez H.G.B. Ramakers, +10 more
14citations -
Proteome Analysis of Glomerular Formalin-Fixed Paraffin Embedded Kidney Samples Distinguishes Diabetic Nephropathy from Controls2021 Journal of the American Society of Nephrology article Medicine Renal Diseases and Glomerulopathies Open access
Sophie I. Nagelkerken, George M. C. Janssen, Kimberley Veraar, Peter A. van Veelen, Hans J. Baelde, Roy Lardenoije, +3 more
0citations -
APOE genotypes differentially remodel the astrocytic lipid droplet proteome to shape lipid droplet dynamics2026 Nature Communications article Biochemistry, Genetics and Molecular Biology Lipid metabolism and biosynthesis Open access
Carla Cuní‐López, Jessica T. Root, Ying Hao, Niek Blomberg, Sascha Koppes-den Hertog, Dylan C. Sacks, +11 more
0citations -
Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project2020 Journal of Proteome Research article Chemistry Advanced Proteomics Techniques and Applications Open access
Michael R. Hoopmann, Ulrike Kusebauch, Magnus Palmblad, Nuno Bandeira, David D. Shteynberg, Ling-jie He, +5 more
10citations -
Proteome-wide ubiquitinome profiling reveals substrate-specific dynamics within the USP7 network2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Joyce Wolf van der Meer, Jan A. VAN DER KNAAP, Ayestha Sijm, Karel Bezstarosti, Dick H. W. Dekkers, Wouter A. S. Doff, +2 more
0citations -
Human milk oligosaccharide 2’-fucosyllactose protects against high-fat diet-induced obesity by changing intestinal mucus production, composition and degradation linked to changes in gut microbiota and faecal proteome profiles in mice
Paola Paone, Dimitrios Latousakis, Romano Terrasi, Didier Vertommen, Ching Jian, Valentina Borlandelli, +12 more
69citations -
OP39 The effect of phenotype and genotype on the plasma proteome in patients with Inflammatory Bowel Disease2021 Journal of Crohn s and Colitis conference-abstract Biochemistry, Genetics and Molecular Biology Inflammatory Bowel Disease
Arno R. Bourgonje, S Hu, Lieke M. Spekhorst, Dasha V. Zhernakova, Arnau Vich Vila, Lisette A. van Berkel, +12 more
2citations -
Using BONCAT to dissect the proteome of S. aureus persisters2025 mSphere article Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Eva D. C. George Matlalcuatzi, Thomas Bakkum, Pooja Sabu Thomas, Stephan M. Hacker, Bogdan I. Florea, Bastienne Vriesendorp, +3 more
2citations -
Using BONCAT To Dissect The Proteome Of S. aureus Persisters2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Eva D. C. George Matlalcuatzi, Thomas Bakkum, Stephan M. Hacker, Bogdan I. Florea, Bastienne Vriesendorp, Daniel E. Rozen, +1 more
0citations -
The Effect of Phenotype and Genotype on the Plasma Proteome in Patients with Inflammatory Bowel Disease2021 Journal of Crohn s and Colitis article Biochemistry, Genetics and Molecular Biology Inflammatory Bowel Disease Open access
Arno R. Bourgonje, Shixian Hu, Lieke M. Spekhorst, Daria V. Zhernakova, Arnau Vich Vila, Yanni Li, +14 more
40citations -
An advanced method for the release, enrichment and purification of high-quality Arabidopsis thaliana rosette leaf trichomes enables profound insights into the trichome proteome2022 Plant Methods article Agricultural and Biological Sciences Plant Surface Properties and Treatments Open access
Jan Hübbers, Kim Büttgen, Franz Leissing, Melissa Mantz, Markus Pauly, Pitter F. Huesgen, +1 more
19citations -
Allicin inhibits SARS-CoV-2 replication and abrogates the antiviral host response in the Calu-3 proteome2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Garlic and Onion Studies Open access
Kirstin Mösbauer, Verena Nadin Fritsch, Lorenz Adrian, Jörg Bernhardt, Martin C. H. Gruhlke, Alan John Slusarenko, +2 more
12citations -
N-Glycoproteins Have a Major Role in MGL Binding to Colorectal Cancer Cell Lines: Associations with Overall Proteome Diversity2020 International Journal of Molecular Sciences article Biochemistry, Genetics and Molecular Biology Glycosylation and Glycoproteins Research Open access
Martina Pirro, Yassene Mohammed, Sandra J. van Vliet, Yoann Rombouts, Agnese Sciacca, Arnoud H. de Ru, +5 more
40citations -
SUMO-activated target traps (SATTs) enable the identification of a comprehensive E3-specific SUMO proteome2023 Science Advances article Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Daniel Salas‐Lloret, Nicolette S. Jansen, Easa Nagamalleswari, Coen van der Meulen, Ekaterina Gracheva, Arnoud H. de Ru, +6 more
23citations -
Comparison of in-gel and in-solution proteolysis in the proteome profiling of organ perfusion solutions2023 Clinical Proteomics article Chemistry Advanced Proteomics Techniques and Applications Open access
Corinna Snashall, Chris W. Sutton, Maria Letizia Lo Faro, Carlo D. L. Ceresa, Rutger J. Ploeg, Sadr ul Shaheed
14citations -
The Association of Biomolecular Resource Facilities Proteome Informatics Research Group Study on Metaproteomics (iPRG-2020)2023 Journal of Biomolecular Techniques JBT article Chemistry Advanced Proteomics Techniques and Applications Open access
Pratik Dilip Jagtap, Michael R. Hoopmann, Benjamin A. Neely, Antony Harvey, Lukas Käll, Yasset Pérez‐Riverol, +4 more
12citations