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MorphoGraphX 2.0: Providing context for biological image analysis with positional information2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Soeren Strauss, Adam Runions, Brendan Lane, Dennis Eschweiler, Namrata Bajpai, Nicola Trozzi, +16 more
10citations -
Gut microbiota prevents small intestinal tumor formation due to bile acids in gnotobiotic mice2024 Microbiome Research Reports article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Esther Wortmann, David Wylensek, Marijana Basic, Sven Hermeling, André Bleich, Dirk Haller, +4 more
2citations -
Modelling the mechanical cross-talk between cells and fibrous extracellular matrix using hybrid cellular Potts and molecular dynamics methods2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
Erika Tsingos, Bente Hilde Bakker, Koen A.E. Keijzer, Hermen Jan Hupkes, Roeland M. H. Merks
1citations -
Human pluripotent stem cells-derived inner ear organoids recapitulate otic development in vitro2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Hearing, Cochlea, Tinnitus, Genetics Open access
Daniela Doda, Sara Alonso Jimenez, Hubert Rehrauer, Jose F. Carreño, Victoria Valsamides, Stefano Di Santo, +7 more
1citations -
Hyper-physiologic mechanical cues, as an osteoarthritis disease relevant environmental perturbation, cause a critical shift in set-points of methylation at transcriptionally active CpG sites in neo-cartilage organoids
Niek G.C. Bloks, Amanda R. Dicks, Zainab Harissa, Rob G. H. H. Nelissen, Ghazaleh Hajmousa, Y.F. Ramos, +3 more
1citations -
Defining the minimal structural requirements of DivIVA in filamentous Actinomycetota2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Maarten Lubbers, Belmin Bajramović, Véronique Ongenae, Joost J. Willemse, Dieuwertje A. de Bruin, Niels Mulder, +6 more
0citations -
Hybrid cellular Potts and bead-spring modeling of cells in fibrous extracellular matrix2023 Biophysical Journal article Biochemistry, Genetics and Molecular Biology Cellular Mechanics and Interactions Open access
Erika Tsingos, Bente Hilde Bakker, Koen A.E. Keijzer, Hermen Jan Hupkes, Roeland M. H. Merks
29citations -
The shapes of elongating gastruloids are consistent with convergent extension driven by a combination of active cell crawling and differential adhesion2024 PLoS Computational Biology article Biochemistry, Genetics and Molecular Biology Developmental Biology and Gene Regulation Open access
Esmée Adegeest, Noémie M. L. P. Bérenger-Currias, Maria Mircea, Roeland M. H. Merks, Stefan Semrau
24citations -
A combination of convergent extension and differential adhesion explains the shapes of elongating gastruloids2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Developmental Biology and Gene Regulation Open access
Martijn A. de Jong, Esmée Adegeest, Noémie M. L. P. Bérenger-Currias, Maria Mircea, Roeland M. H. Merks, Stefan Semrau
2citations -
Essential and dispensable domains of DivIVA for walled growth in filamentous Actinomycetota2025 Open Biology article Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Maarten Lubbers, Belmin Bajramović, Véronique Ongenae, Joost J. Willemse, Dieuwertje A. de Bruin, Niels Mulder, +6 more
1citations