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Benchmarking Variational AutoEncoders on cancer transcriptomics data2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gene expression and cancer classification Open access
Mostafa Eltager, Tamim Abdelaal, Mohammed Charrout, Ahmed Essam Mahfouz, Marcel J. T. Reinders, Stavros Makrodimitris
4citations -
Improving Mathematical Models of Cancer through Game-Theoretic Modelling: A Study in Non-Small Cell Lung Cancer2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Mathematics Mathematical Biology Tumor Growth Open access
Virginia Ardévol Martínez, Narmin Ghaffari Laleh, Frank Thuijsman, Joel S. Brown, Rachel Cavill, Jakob Nikolas Kather, +1 more
7citations -
GL-ICNN: An End-To-End Interpretable Convolutional Neural Network for the Diagnosis and Prediction of Alzheimer's Disease2025 arXiv (Cornell University) preprint Medicine Dementia and Cognitive Impairment Research Open access
Wenjie Kang, Lize Corrine Jiskoot, Peter Paul De Deyn, Geert Jan Biessels, Huiberdina L. Koek, Jurgen A.H.R. Claassen, +5 more
0citations -
FROG Analysis Ensures the Reproducibility of Genome Scale Metabolic Models2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Karthik Raman, Miroslav Kratochvíl, Brett G. Olivier, Matthias König, Pratyay Sengupta, Dinesh Kumar Kuppa Baskaran, +85 more
11citations -
A Wnt-specific astacin proteinase controls head formation in Hydra2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Wnt/β-catenin signaling in development and cancer Open access
Berenice Ziegler, Irene Yiallouros, Benjamin Trageser, Sumit Kumar, Moritz Mercker, Svenja Kling, +9 more
3citations -
A standardized framework for risk-based assessment of treatment effect heterogeneity in observational healthcare databases2020 arXiv (Cornell University) preprint Mathematics Advanced Causal Inference Techniques Open access
Alexandros Rekkas, David V. Klaveren, Patrick B. Ryan, Ewout Willem Steyerberg, David M. Kent, Peter R. Rijnbeek
1citations -
Medical foundation models converge less under label supervision2026 arXiv (Cornell University) preprint Medicine Artificial Intelligence in Healthcare and Education Open access
Soroosh Tayebi Arasteh, Sebastian Ziegelmayer, Mahshad Lotfinia, Lisa C. Adams, Sven Nebelung, Jakob Nikolas Kather, +1 more
0citations -
Estimating Dense-Packed Zone Height in Liquid-Liquid Separation: A Physics-Informed Neural Network Approach2026 RWTH Publications (RWTH Aachen) preprint Physics and Astronomy Model Reduction and Neural Networks Open access
Mehmet Velioglu, Song Zhai, Alexander Mitsos, Adel Mhamdi, Andreas Jupke, Manuel Dahmen
0citations -
Estimating Dense-Packed Zone Height in Liquid-Liquid Separation: A Physics-Informed Neural Network Approach2026 arXiv (Cornell University) preprint Physics and Astronomy Model Reduction and Neural Networks Open access
Mehmet Velioglu, Song Zhai, Alexander Mitsos, Adel Mhamdi, Andreas Jupke, Manuel Dahmen
0citations -
Segmented regression to streamline semi-mechanistic pharmacodynamic modelling of antibiotic effects2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Antibiotics Pharmacokinetics and Efficacy Open access
Anh Duc Pham, Wisse van Os, J. S. F. Brink, J. G. Coen van Hasselt, Linda B. S. Aulin
0citations