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NS-Forest: A machine learning method for the objective identification of minimum marker gene combinations for cell type determination from single cell RNA sequencing2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Brian D. Aevermann, Yun Zhang, Mark A. Novotny, Trygve E. Bakken, Jeremy A. Miller, Rebecca D. Hodge, +3 more
12citations -
A toolkit for transposon libraries and functional genomics in intestinal Bacteroidales2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Carlos Geert Pieter Voogdt, Indra Roux, Nicolai Karcher, Afonso Martins Bravo, Lajos Kalmár, Vallo Varik, +4 more
5citations -
RB-TnSeq elucidates dicarboxylic acid specific catabolism in β-proteobacteria for improved plastic monomer upcycling2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Microbial bioremediation and biosurfactants Open access
Allison N. Pearson, Graham A. Hudson, Jacob B. Roberts, Javier Menasalvas, Aaron A. Vilchez, Matthew R. Incha, +6 more
1citations -
Identification of SENP7 and UTF1 / VENTX as new loci influencing clustered protocadherin methylation across blood and brain using a genome-wide association study2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Yunfeng Liu, Maja Vukić, Eilis J. Hannon, Hailiang Mei, Jonathan S. Mill, Lucia Daxinger, +1 more
1citations -
The Plasmodium falciparum CCCH zinc finger protein MD3 regulates male gametocytogenesis through its interaction with RNA-binding proteins2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Malaria Research and Control Open access
Afia Farrukh, Jean Pierre Musabyimana, Ute Distler, Vanessa Jil Mahlich, Fabian Bick, Stefan Tenzer, +2 more
0citations -
Epigenetic age-predictions in mice using pyrosequencing, droplet digital PCR or barcoded bisulfite amplicon sequencing2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Yang Han, Miloš Nikolić, Michael Gobs, Julia Franzen, Gerald de Haan, Hartmut Geiger, +1 more
0citations -
Functional analysis of the fatty acid and alcohol metabolism of Pseudomonas putida using RB-TnSeq2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Mitchell G. Thompson, Matthew R. Incha, Allison N. Pearson, Matthias Schmidt, William A. Sharpless, Christopher B. Eiben, +12 more
0citations -
DNMT3A knockouts in human iPSCs prevent de novo DNA methylation and reveal growth advantage during hematopoietic differentiation2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Olivia Cypris, Julia Franzen, Joana Frobel, Philipp Glück, Chao‐Chung Kuo, Stephani Schmitz, +3 more
0citations -
SIngle cell level Genotyping Using scRna Data (SIGURD)2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Martin Graßhoff, Milena Kalmer, Nicolas Chatain, Kim Kricheldorf, Angela Maurer, Ralf Weiskirchen, +2 more
0citations -
The unseen invaders: tracking phylogeographic dynamics and genetic diversity of cryptic Pomacea canaliculata and P. maculata (Golden Apple Snails) across Taiwan2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genetic diversity and population structure Open access cited by 1 patent
Pritam Banerjee, Gobinda Dey, Jyoti Prakash Maity, Kathryn A. Stewart, Raju Kumar Sharma, Michael W.Y. Chan, +2 more
0citations