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Identification of kinase inhibitors as potential host-directed therapies for intracellular bacteria2024 Scientific Reports article Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Robin H. G. A. van den Biggelaar, Kimberley V. Walburg, Susan J. F. van den Eeden, Cassandra L. R. van Doorn, Eugenia Meiler, Alex S. de Ries, +4 more
12citations -
Novel Antibacterial Agents SAAP-148 and Halicin Combat Gram-Negative Bacteria Colonizing Catheters2023 Antibiotics article Immunology and Microbiology Antimicrobial Peptides and Activities Open access
Nesrine Bouhrour, Tanny J. K. van der Reijden, Michella M. Voet, Bep Schonkeren-Ravensbergen, Robert A. Cordfunke, Jan Wouter Drijfhout, +2 more
8citations -
Harzianic acid exerts antimicrobial activity against Gram-positive bacteria and targets the cell membrane2024 Frontiers in Microbiology article Medicine Microbial Natural Products and Biosynthesis Open access
Xudong Ouyang, Jelmer Hoeksma, Wouter A. G. Beenker, Samantha L. van der Beek, Jeroen den Hertog
7citations -
Machine Learning-Identified Potent Antimicrobial Peptides Against Multidrug-Resistant Bacteria and Skin Infections2025 Antibiotics article Immunology and Microbiology Antimicrobial Peptides and Activities Open access
Gizem Babuççu, Nikitha Vavilthota, Colin Bournez, Leonie de Boer, Robert A. Cordfunke, Peter H. Nibbering, +4 more
5citations -
Harzianic Acid has multi-target antimicrobial activity against Gram-Positive Bacteria2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Microbial Natural Products and Biosynthesis Open access
Xudong Ouyang, Jelmer Hoeksma, Wouter A. G. Beenker, Samantha L. van der Beek, Jeroen den Hertog
5citations -
Identification and characterization of diverse OTU deubiquitinases in bacteria2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Ubiquitin and proteasome pathways Open access
Alexander F. Schubert, Justine V. Nguyen, Tyler G. Franklin, Paul P. Geurink, Cameron G. Roberts, Daniel J. Sanderson, +5 more
5citations -
An Rcs Stress-Based High-Throughput Screen Reveals Novel Gyrase Inhibitors as Indirect Inducers of Cell Envelope Stress in Gram-Negative Bacteria2025 ACS Infectious Diseases article Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Laurence Cleenewerk, Willemijn Wouters, Joost J. Willemse, Meiling Gao, Vladyslav Lysenko, Jeroen M. Punt, +4 more
4citations -
Fungal communities are passengers in community development of dune ecosystems, while bacteria are not2024 Ecology article Agricultural and Biological Sciences Mycorrhizal Fungi and Plant Interactions Open access
Chenguang Gao, Т. Martijn Bezemer, Peter M. van Bodegom, Petr Baldrián, Petr Kohout, Riccardo Mancinelli, +2 more
4citations -
Identification of kinase inhibitors as potential host-directed therapies for intracellular bacteria2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Robin H. G. A. van den Biggelaar, Kimberley V. Walburg, Susan J. F. van den Eeden, Cassandra L. R. van Doorn, Eugenia Meiler, Alex S. de Ries, +4 more
3citations -
Cultivation of anammox bacteria from a tropical lake in Indonesia using a novel filter bioreactor to enhance nitrogen removal efficiency2025 Water Science & Technology article Environmental Science Wastewater Treatment and Nitrogen Removal Open access
Puti Sri Komala, Randi Permana Putra, Muhammad Ali, Norihisa Matsuura, Kazuyoshi Koike, Jinsong Wang, +2 more
2citations -
Charge Injection and Interfiber Electrical Conduction in Cable Bacteria2026 ACS Applied Materials & Interfaces article Environmental Science Microbial Fuel Cells and Bioremediation Open access
Cosimo Tommasi, Anastasia Gerzhik, Silvia Hidalgo‐Martinez, Dirk Mayer, Filip J. R. Meysman, Herre S. J. van der Zant
1citations -
Human intestinal Bacteria Collection (HiBC): 16S rRNA gene sequences2024 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Thomas C. A. Hitch, Johannes M. Masson, Charlie Pauvert, Nicole Simone Treichel, Afrizal Afrizal, Thomas Riedel, +2 more
0citations -
Human intestinal Bacteria Collection (HiBC): Isolates and genomes metadata2025 Zenodo (CERN European Organization for Nuclear Research) dataset Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access
Thomas C. A. Hitch, Johannes M. Masson, Charlie Pauvert, Nicole Simone Treichel, Afrizal Afrizal, Thomas Riedel, +2 more
0citations -
Gram-positive bacteria secrete RNA aptamers to activate human STING for IL-1β release2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Inflammasome and immune disorders Open access
Shivalee N. Duduskar, Mohamed Ghait, Martin Westermann, Huijuan Guo, Anuradha Ramoji, Christoph Sponholz, +11 more
0citations -
Integrating Biochar, Bacteria, and Plants for Sustainable Remediation of Soils Contaminated with Organic Pollutants2022 Environmental Science & Technology article Environmental Science Microbial bioremediation and biosurfactants Open access cited by 1 patent
Leilei Xiang, Jean Damascene Harindintwali, Fang Wang, Marc A. Redmile-Gordon, Scott X. Chang, Yuhao Fu, +11 more
455citations -
Predicting rhizosphere-competence-related catabolic gene clusters in plant-associated bacteria with rhizoSMASH2025 Nature Communications article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access
Yuze Li, Mingxue Sun, Jos M. Raaijmakers, Liesje Mommer, Fusuo S. Zhang, Chunxu Song, +1 more
19citations -
Paecilomycone Inhibits Quorum Sensing in Gram-Negative Bacteria2023 Microbiology Spectrum article Biochemistry, Genetics and Molecular Biology Bacterial biofilms and quorum sensing Open access
Wouter A. G. Beenker, Jelmer Hoeksma, Marie Bannier-Hélaouët, Hans C. Clevers, Jeroen den Hertog
9citations -
Phyletic distribution and diversification of the Phage Shock Protein stress response system in bacteria and archaea2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bacterial Genetics and Biotechnology Open access
Philipp F. Popp, Vadim M. Gumerov, Ekaterina P. Andrianova, Lisa Bewersdorf, Thorsten Mascher, Igor B. Zhulin, +1 more
5citations -
Distinct roles of bacteria and fungi in driving rhizosphere and bulk soil multifunctionality of Abies georgei in an alpine forest2025 BMC Plant Biology article Agricultural and Biological Sciences Soil Carbon and Nitrogen Dynamics Open access
Chenguang Gao, Т. Martijn Bezemer, Jia Liu, Deyi Wang, Jipeng Wang, Shaojun Deng, +2 more
4citations