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Identification of determinants of high-fidelity DNA synthesis in M. smegmatis DnaE1 through in silico and in vivo approaches2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Tuberculosis Research and Epidemiology Open access
Rosan C.M. Kuin, Gerard J. P. van Westen, Meindert Hugo Lamers
0citations -
TET CpG sequence context specific DNA demethylation shapes progression of IDH-mutant gliomas2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Glioma Diagnosis and Treatment Open access
Youri Hoogstrate, Santoesha A. Ghisai, Levi van Hijfte, Iris J. de Heer, Marta Padovan, Maurice de Wit, +24 more
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Enhancing metabarcoding efficiency and ecological insights through integrated taxonomy and DNA reference barcoding: a case study on beach meiofauna2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Environmental DNA in Biodiversity Studies Open access
Jan‐Niklas Macher, Alejandro Martínez, Sude Çakir, Pierre‐Etienne Cholley, Eleni Christoforou, Marco Curini Galletti, +11 more
3citations -
Rational evolution of a recombinant DNA polymerase for efficient incorporation of unnatural nucleotides by dual-site boosting2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Enzyme Catalysis and Immobilization Open access
Ruyin Cao, Lili Zhai, Qingqing Xie, Zi Wang, Yue Zheng, Wenwei Zhang, +5 more
0citations -
Detection of fusion transcripts and their genomic breakpoints from RNA sequencing data2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Youri Hoogstrate, Malgorzata A. Komor, René Böttcher, Job van Riet, Harmen J.G. van de Werken, Stef van Lieshout, +22 more
1citations -
Environmentally-induced DNA methylation is inherited across generations in an aquatic keystone species ( Daphnia magna )2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access
Nathalie Feiner, Reinder Radersma, Louella J. Vasquez, Markus Ringnér, Björn Nystedt, Amanda Raine, +3 more
3citations -
DNA metabarcoding successfully quantifies relative abundances of arthropod taxa in songbird diets: a validation study using camera-recorded diets2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Environmental DNA in Biodiversity Studies Open access
Yvonne I. Verkuil, Marion Nicolaus, Richard Ubels, Maurine W. Dietz, Jelmer M. Samplonius, Annabet Galema, +3 more
6citations -
Ancient DNA evidence for the ecological globalisation of cod fishing in medieval and post-medieval Europe2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Forensic and Genetic Research Open access
Lourdes Martínez-García, Giada Ferrari, Angélica Cuevas, Lane M. Atmore, Begoña López‐Arias, Mark Culling, +11 more
1citations -
MUSICiAn: Genome-wide Identification of Genes Involved in DNA Repair via Control-Free Mutational Spectra Analysis2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology DNA Repair Mechanisms Open access
Colm Seale, Marco Barazas, Robin van Schendel, Marcel Tijsterman, Joana P. Gonçalves
3citations -
Rational evolution of a recombinant DNA polymerase for efficient incorporation of unnatural nucleotides by dual-site boosting2022 Research Square preprint Biochemistry, Genetics and Molecular Biology Enzyme Catalysis and Immobilization Open access
Wenping Lyu, Ruyin Cao, Lili Zhai, Qingqing Xie, Zi Wang, Yue Zheng, +5 more
0citations -
Spatio-temporal transcriptomic analysis reveals distinct nephrotoxicity, DNA damage and regeneration response after cisplatin2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Chemotherapy-induced organ toxicity mitigation Open access
Lukas S. Wijaya, Steven J. Kunnen, Panuwat Trairatphisan, Ciaran P. Fisher, Meredith E. Crosby, Kai Schaefer, +11 more
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AncientMetagenomeDir dating metadataset highlights need for standardised radiocarbon reporting in ancient DNA2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Earth and Planetary Sciences Archaeology and ancient environmental studies Open access
Katherine Hearne, Diāna Spurīte, Alexander Hübner, Biancamaria Bonucci, Yuejiao Huang, Bjørn Peare Bartholdy, +38 more
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Improved pathogen identification in sepsis or septic shock by clinical metagenomic sequencing2025 medRxiv preprint Biochemistry, Genetics and Molecular Biology Bacterial Identification and Susceptibility Testing Open access
Thorsten Brenner, Sebastian Decker, Yevhen Vainshtein, Silke Grumaz, Mehdi Manoochehri, Manuel Feißt, +21 more
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“Universal Hyb-Seq kits capture considerable intraspecific variation: Less is more in herbarium-inclusive molecular ecology”2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genetic diversity and population structure Open access
Yannick Woudstra, Anne‐Sophie Quatela, Cornelis A. M. Wagemaker, Slavica Ivanovic, Tanja Slotte, Patrick G. Meirmans, +2 more
1citations -
SIngle cell level Genotyping Using scRna Data (SIGURD)2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Martin Graßhoff, Milena Kalmer, Nicolas Chatain, Kim Kricheldorf, Angela Maurer, Ralf Weiskirchen, +2 more
0citations -
Deciphering the complex clonal heterogeneity of polycythemia vera and the response to interferon alpha2023 Research Square preprint Medicine Myeloproliferative Neoplasms: Diagnosis and Treatment Open access
Milena Kalmer, Martin Graßhoff, Tiago Maié, Kristina Pannen, Marcelo A. S. Toledo, Margherita Vieri, +13 more
2citations