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SpaGE: Spatial Gene Enhancement using scRNA-seq2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 4 patents
Tamim Abdelaal, Soufiane M. C. Mourragui, Ahmed Essam Mahfouz, Marcel J. T. Reinders
7citations -
Multi-omics approach identifies PI3 as a biomarker for disease severity and hyper-keratinization in psoriasis2023 Journal of Dermatological Science article Immunology and Microbiology Psoriasis: Treatment and Pathogenesis Open access
Jingwen Deng, Emmerik F A Leijten, Yongzhan Zhu, Michel Olde Nordkamp, Shuyan Ye, Juliëtte N. Pouw, +8 more
29citations -
MGcount: a total RNA-seq quantification tool to address multi-mapping and multi-overlapping alignments ambiguity in non-coding transcripts2022 BMC Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access cited by 2 patents
Andrea Hita, Gilles Brocart, Marc Rehmsmeier, Anna Alemany, Sol Schvartzman
17citations -
Genomic profiling defines variable clonal relatedness between invasive breast cancer and primary ductal carcinoma in situ2021 medRxiv preprint Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Esther H. Lips, Tapsi Kumar, Anargyros Megalios, Lindy L. Visser, Michael Sheinman, Angelo Fortunato, +41 more
4citations -
Donor tissue-resident memory-like T and NK cells generate a transient peripheral chimerism in lung transplant recipients, potentially protective from chronic lung allograft dysfunction2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Transplantation: Methods and Outcomes Open access
Ramon Bellmàs-Sanz, Anna Maria Hitz, Bettina Wiegmann, Jenny F. Kühne, Evgeny Chichelnitskiy, Theodore S. Kapellos, +15 more
1citations -
Efficient generation of lower induced motor neurons by coupling Ngn2 expression with developmental cues2023 Cell Reports article Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access cited by 1 patent
Francesco Limone, Irune Guerra San Juan, Jana M. Mitchell, Janell L.M. Smith, Kavya Raghunathan, Daniel Meyer, +12 more
55citations -
ERS International Congress, Madrid, 2019: highlights from the Basic and Translational Science Assembly2020 ERJ Open Research article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Niki D. J. Ubags, Jonathan R. Baker, Agnes Wilhelmina Boots, Rita Costa, Natalia El-Merhie, Aurélie Fabre, +7 more
4citations -
CrossTalkeR: analysis and visualization of ligand–receptorne tworks2021 Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
James Shiniti Nagai, Nils B. Leimkühler, Michael T. Schaub, Rebekka K. Schneider, Ivan G. Costa
58citations -
CrossTalkeR: Analysis and Visualisation of Ligand Receptor Networks2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
James Shiniti Nagai, Nils B. Leimkühler, Michael T. Schaub, Rebekka K. Schneider, Ivan G. Costa
9citations -
Deciphering the complex clonal heterogeneity of polycythemia vera and the response to interferon alfa2025 Blood Advances article Medicine Myeloproliferative Neoplasms: Diagnosis and Treatment Open access
Milena Kalmer, Martin Graßhoff, Tiago Maié, Kristina Pannen, Marcelo A. S. Toledo, Margherita Vieri, +19 more
4citations -
Deciphering the complex clonal heterogeneity of polycythemia vera and the response to interferon alpha2023 Research Square preprint Medicine Myeloproliferative Neoplasms: Diagnosis and Treatment Open access
Milena Kalmer, Martin Graßhoff, Tiago Maié, Kristina Pannen, Marcelo A. S. Toledo, Margherita Vieri, +13 more
2citations -
ETV2 Upregulation Marks the Specification of Early Cardiomyocytes and Endothelial Cells During Co-differentiation2022 Stem Cells article Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Xu Cao, Maria Mircea, Gopala Krishna Yakala, Francijna E. van den Hil, Marcella Brescia, Hailiang Mei, +3 more
4citations -
Exploring the choroidal vascular labyrinth and its molecular and structural roles in health and disease2021 Progress in Retinal and Eye Research article Medicine Retinal Diseases and Treatments Open access
Joost Brinks, Elon H. C. van Dijk, Ingeborg Klaassen, Reinier O. Schlingemann, Szymon M. Kiełbasa, Eszter Emri, +4 more
78citations -
Carotid plaque macrophage burden and inflammatory lipid-associated macrophage markers predict secondary major adverse cardiovascular events after endarterectomy2026 European Heart Journal article Immunology and Microbiology Atherosclerosis and Cardiovascular Diseases Open access
Koen H.M. Prange, Gemma Bel-Bordes, Marie A.C. Depuydt, Panos Barlampas, Moritz Reif, Max L.B. Grönloh, +24 more
13citations -
Keratin dynamics govern the establishment of the maternal-fetal interface2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Skin and Cellular Biology Research Open access
Wallis Nahaboo, Sema Elif Eski, Marjorie Vermeersch, Bechara Saykali, Daniel Monteyne, Thomas Michael Magin, +5 more
2citations -
Genomic analysis defines clonal relationships of ductal carcinoma in situ and recurrent invasive breast cancer2022 Nature Genetics article Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access
Esther H. Lips, Tapsi Kumar, Anargyros Megalios, Lindy L. Visser, Michael Sheinman, Angelo Fortunato, +51 more
98citations