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scTopoGAN: unsupervised manifold alignment of single-cell data2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Akash Kumar Singh, Marcel J. T. Reinders, Ahmed Essam Mahfouz, Tamim Abdelaal
1citations -
METIS for ELT: optical alignment and testing of the IFU of the LM-band spectrometer2026 arXiv (Cornell University) preprint Physics and Astronomy Astronomy and Astrophysical Research Open access
Lawrence Bissell, Éamonn J. Harvey, Stephen Todd, Valentina Oyarzún, Alastair Macleod, Sandi Wilson, +4 more
0citations -
Identifying commonalities between cell lines and tumors at the single cell level using Sobolev Alignment of deep generative models2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Soufiane M. C. Mourragui, Joseph C. Siefert, Marcel J. T. Reinders, Marco Loog, Lodewyk F.A. Wessels
2citations -
scDecorr - Feature decorrelation representation learning with domain adaptation enables self-supervised alignment of multiple single-cell experiments0citations
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Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Martin Guilliams, Johnny Bonnardel, Birthe Haest, Bart Vanderborght, Anna Bujko, Liesbet Martens, +30 more
97citations -
MICONIC: The spatial relationship between star formation and the AGN in Centaurus A revealed by JWST/MIRI2026 arXiv (Cornell University) preprint Physics and Astronomy Galaxies: Formation, Evolution, Phenomena Open access
Olivia Jones, M. L. Jones, D. Dicken, G. S. Wright, M. García Marín, A. Alonso‐Herrero, +18 more
0citations -
Cell type matching across species using protein embeddings and transfer learning2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Kirti Biharie, Lieke Michielsen, Marcel J. T. Reinders, Ahmed Essam Mahfouz
0citations -
Atlas-scale spatially aware clustering with support for 3D and multimodal data using SpatialLeiden2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Niklas Müller‐Bötticher, Alexander Malt, Paul Kießling, Roland Eils, Christoph Kuppe, Naveed Ishaque
0citations -
CPMsi: a data-driven Computational Pipeline for fast, large-scale Mass Spectrometry Imaging analysis2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Chemistry Mass Spectrometry Techniques and Applications Open access
Paola Tasca, И. В. Сидоров, Hans Dalebout, Nina Ogrinc, Ron M. A. Heeren, Aiko P. J. de Vries, +5 more
0citations -
A LOFAR sample of luminous compact sources coincident with nearby dwarf galaxies2023 arXiv (Cornell University) preprint Physics and Astronomy Galaxies: Formation, Evolution, Phenomena Open access
D. Vohl, Harish K. Vedantham, Jason W. T. Hessels, C. Bassa, D. Cook, David L. Kaplan, +1 more
0citations -
Cross-species consensus atlas of the primate basal ganglia2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Nelson Johansen, Yuanyuan Fu, Matthew T. Schmitz, Alma Dubuc, Niklas Kempynck, Morgan E. Wirthlin, +87 more
18citations -
Morphoelectric Diversity and Specialization of Neuronal Cell Types in the Primate Striatum2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Xiao-Ping Liu, Rachel A. Dalley, Nelson Johansen, Agata Budzillo, Julian Thijssen, Jeremy A. Miller, +86 more
2citations -
CACTUS: integrating clonal architecture with genomic clustering and transcriptome profiling of single tumor cells2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Shadi Darvish Shafighi, Szymon M. Kiełbasa, Julieta Sepúlveda-Yáñez, Ramin Monajemi, Davy Cats, Hailiang Mei, +5 more
4citations -
scRIPT: a rapid, high-coverage single-cell lineage-tracing method applied to the hematoendothelial differentiation of embryonic stem cells2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Rıdvan Çeti̇n, Eric M. Bindels, Jente van Staalduinen, Lucas Kuijpers, Giulia Picco, Mathijs Arnoud Sanders, +6 more
0citations -
Resolved Maps of Gas and Dust in a Massive Quiescent Galaxy at z=2 from INQUEST-JWST: Evidence of Accretion and Rejuvenation2026 arXiv (Cornell University) preprint Physics and Astronomy Galaxies: Formation, Evolution, Phenomena Open access
Sai Gangula, Andrew B. Newman, Meng Gu, Sirio Belli, Katherine E. Whitaker, Tania M. Barone, +7 more
0citations -
CO Line Emission Surfaces and Vertical Structure in Mid-Inclination Protoplanetary Disks2022 arXiv (Cornell University) preprint Physics and Astronomy Astrophysics and Star Formation Studies Open access
Charles J. Law, Sage Crystian, Richard D. Teague, Karin I. Öberg, Evan A. Rich, Sean M. Andrews, +15 more
58citations -
Axis-Aligned Semantics for ODRL: Resolving Dimensional Ambiguity in Policy Constraints2026 arXiv (Cornell University) preprint Computer Science Digital Rights Management and Security Open access
Daham Mohammed Mustafa, Diego Collarana, Sabrina Kirrane, Christoph Lange, Christoph Quix, Rafiqul Haque, +2 more
1citations