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Enhancing metabarcoding efficiency and ecological insights through integrated taxonomy and DNA reference barcoding: a case study on beach meiofauna2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Environmental DNA in Biodiversity Studies Open access
Jan‐Niklas Macher, Alejandro Martínez, Sude Çakir, Pierre‐Etienne Cholley, Eleni Christoforou, Marco Curini Galletti, +11 more
3citations -
The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Ann M. Mc Cartney, Giulio Formenti, Alice Mouton, Diego N. De Panis, Luísa S. Marins, Henrique G. Leitão, +93 more
15citations -
The Leipzig Catalogue of Vascular Plants (LCVP) – An improved taxonomic reference list for all known vascular plants2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant Diversity and Evolution Open access
Martin Freiberg, Marten Winter, Alessandro Gentile, Alexander Zizka, Alexandra Nora Muellner-Riehl, Alexandra Weigelt, +1 more
6citations -
The mitochondrial genomes of 11 aquatic macroinvertebrate species from Cyprus2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Environmental Science Environmental DNA in Biodiversity Studies Open access
Jan‐Niklas Macher, Katerina Drakou, Athina Papatheodoulou, Berry van der Hoorn, Marlen Ines Vasquez
1citations -
Genotyping by Sequencing for Estimating Relative Abundances of Diatom Taxa in Mock Communities2022 Research Square preprint Environmental Science Environmental DNA in Biodiversity Studies Open access
Ozan Çiftçi, Cornelis A. M. Wagemaker, Adrienne Mertens, Peter M. van Bodegom, Walter Pirovano, Barbara Gravendeel
0citations -
SeroBA(v2.0) and SeroBAnk: a robust genome-based serotyping scheme and comprehensive atlas of capsular diversity in Streptococcus pneumoniae2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Pneumonia and Respiratory Infections Open access
Oliver Lorenz, Alannah C. King, Harry C. H. Hung, Feroze Ganaie, Anne L. Wyllie, Sam Manna, +8 more
3citations -
Development of an amplicon nanopore sequencing strategy for detection of mutations conferring intermediate resistance to vancomycin in Staphylococcus aureus strains2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Antimicrobial Resistance in Staphylococcus Open access
Abraham G Moller, Robert A. Petit, Michelle H. Davis, Timothy D. Read
0citations -
Benchmark of thirteen bioinformatic pipelines for metagenomic virus diagnostics using datasets from clinical samples2021 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access
Jutte J.C. de Vries, Julianne Rose Brown, Nicole Fischer, Igor A. Sidorov, Sofia Morfopoulou, Jiabin Huang, +24 more
2citations -
MACA: Marker-based automatic cell-type annotation for single cell expression data2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Yang Xu, Simon J. Baumgart, Christian M. Stegmann, Sikander Hayat
2citations