Papers matching “omics data interpretation” 24
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iSODA: A Comprehensive Tool for Integrative Omics Data Analysis in Single- and Multi-Omics Experiments2025 Analytical Chemistry article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Damien Olivier‐Jimenez, Rico J. E. Derks, Oscar Harari, Carlos C Cruchaga, Muhammad Ali, Alessandro Ori, +5 more
10citations -
Phenotype prediction using biologically interpretable neural networks on multi-cohort multi-omics data2024 npj Systems Biology and Applications article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Arno van Hilten, Jeroen van Rooij, Bastiaan T. Heijmans, Peter A.C. ’t Hoen, Joyce B. J. van Meurs, Rick Jansen, +46 more
22citations -
tRigon: an R package and Shiny App for integrative (path-)omics data analysis2024 BMC Bioinformatics article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
David Laurin Hölscher, Michaël Goedertier, Barbara M. Klinkhammer, Patrick Droste, Ivan G. Costa, Peter Boor, +1 more
7citations -
Hyperpathway: visualizing organization of pathway-molecule enriched interactions in omics studies via hyperbolic bipartite network embedding2026 npj Systems Biology and Applications article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Ilyes Abdelhamid, Ziheng Liao, Yuchi Liu, Armel Lefebvre, Aldo Acevedo, Carlo Vittorio Cannistraci
0citations -
scTopoGAN: unsupervised manifold alignment of single-cell data2023 Bioinformatics Advances article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Akash Kumar Singh, Kirti Biharie, Marcel J. T. Reinders, Ahmed Essam Mahfouz, Tamim Abdelaal
6citations -
Dynamic data-driven meta-analysis for prioritisation of host genes implicated in COVID-192020 Scientific Reports article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Nick Parkinson, Natasha Rodgers, Max Head Fourman, Bo Wang, Marie Zechner, Maaike C. Swets, +5 more
50citations -
OmniPath: integrated knowledgebase for multi-omics analysis2025 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Dénes Türei, Jonathan Schaul, Nicolàs Palacio‐Escat, Balázs Bohár, Yunfan Bai, Francesco Ceccarelli, +25 more
23citations -
BERNN: Enhancing classification of Liquid Chromatography Mass Spectrometry data with batch effect removal neural networks2024 Nature Communications article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access cited by 1 patent
Simon J. Pelletier, Mickaël Leclercq, Florence Roux‐Dalvai, Matthijs B. de Geus, Shannon N. Leslie, Weiwei Wang, +6 more
24citations -
Beyond benchmarking: an expert-guided consensus approach to spatially aware clustering2026 Nature Methods article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Jieran Sun, Kirti Biharie, Peiying Cai, Niklas Müller‐Bötticher, Paul Kießling, Meghan A. Turner, +47 more
5citations -
A framework for employing longitudinally collected multicenter electronic health records to stratify heterogeneous patient populations on disease history2022 Journal of the American Medical Informatics Association article Computer Science Machine Learning in Healthcare Open access
Marc P. Maurits, Ilya Korsunsky, Soumya Raychaudhuri, Shawn N. Murphy, Jordan W. Smoller, Scott T. Weiss, +8 more
13citations -
INSIGHT: An integrated framework for safe and sustainable chemical and material assessment2025 Computational and Structural Biotechnology Journal article Environmental Science Chemistry and Chemical Engineering Open access
Angela Serra, Dimitrios Zouraris, Alexandra Schaffert, Marcella Torres Maia, Periklis Tsiros, Ishita Virmani, +44 more
18citations -
Reference materials for MS-based untargeted metabolomics and lipidomics: a review by the metabolomics quality assurance and quality control consortium (mQACC)2022 Metabolomics article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access cited by 2 patents
Katrice A. Lippa, Juan J. Aristizabal‐Henao, Richard D. Beger, John A. Bowden, Corey D. Broeckling, Chris Beecher, +20 more
140citations -
1H-NMR metabolomics-based surrogates to impute common clinical risk factors and endpoints2021 EBioMedicine article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Daniele Bizzarri, Marcel J. T. Reinders, Marian Beekman, P. Eline Slagboom, Bbmri-Nl, Erik B. van den Akker
23citations -
Genetic testing in inherited endocrine disorders: joint position paper of the European reference network on rare endocrine conditions (Endo-ERN)2020 Orphanet Journal of Rare Diseases article Biochemistry, Genetics and Molecular Biology Genomics and Rare Diseases Open access
Thomas Eggermann, Miriam Elbracht, Ingo Kurth, Anders Juul, Trine Holm Johannsen, Irène Netchine, +88 more
28citations -
Cohort profile of the longitudinal Netherlands Study of Depression and Anxiety (NESDA) on etiology, course and consequences of depressive and anxiety disorders2021 Journal of Affective Disorders article Psychology Anxiety, Depression, Psychometrics, Treatment, Cognitive Processes Open access
Brenda W.J.H. Penninx, Merijn Eikelenboom, Erik J. Giltay, Albert M. van Hemert, Harriëtte Riese, Robert A. Schoevers, +1 more
100citations
24 results