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Data and reproduction materials for COFOLDER: Toward Bias-Aware Co-Folding for Ligand Screening and Design.2026 Zenodo (CERN European Organization for Nuclear Research) dataset Computer Science Computational Drug Discovery Methods Open access
Remco L. van den Broek, José Carlos Gómez-Tamayo, Gary Tresadern, Willem Jespers, Gerard J. P. van Westen
0citations -
A blueprint for high affinity SARS-CoV-2 Mpro inhibitors from activity-based compound library screening guided by analysis of protein dynamics2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Computational Drug Discovery Methods Open access
Jonas Goßen, Simone Albani, Anton Hanke, Benjamin Philipp Joseph, Cathrine C. Bergh, Maria Kuzikov, +14 more
5citations -
Identifying Novel Inhibitors for Hepatic Organic Anion Transporting Polypeptides by Machine Learning-Based Virtual Screening2022 Journal of Chemical Information and Modeling article Computer Science Computational Drug Discovery Methods Open access
Alzbeta Tuerkova, Brandon J. Bongers, Ulf Norinder, Orsolya Ungvári, Virág Székely, Andrey Tarnovskiy, +4 more
24citations -
Automated Parallel Synthesis Accelerates Virtual Screening Hit Discovery2026 ChemRxiv preprint Biochemistry, Genetics and Molecular Biology Chemical Synthesis and Analysis Open access
Sean M. McKenna, Martin Šícho, Cas van der Horst, Jesse Maasland, Edith van der Nol, Andrius Bernatavicius, +3 more
0citations -
Automated Parallel Synthesis Accelerates Virtual Screening Hit Discovery2026 Journal of the American Chemical Society article Biochemistry, Genetics and Molecular Biology Chemical Synthesis and Analysis Open access
Sean M. McKenna, Martin Šícho, Cas van der Horst, Jesse Maasland, Edith van der Nol, Gianluca Turco, +4 more
0citations -
Engineering and application of a biosensor with focused ligand specificity2020 Nature Communications article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Dennis Della Corte, Hugo L. van Beek, Falk Syberg, Marcus Schallmey, Felix Tobola, Kai U. Cormann, +9 more
110citations -
Novel assays monitoring direct glucocorticoid receptor protein activity exhibit high predictive power for ligand activity on endogenous gene targets2022 Biomedicine & Pharmacotherapy article Biochemistry, Genetics and Molecular Biology Estrogen and related hormone effects Open access
Laura Van Moortel, Jonathan Thommis, Brecht Maertens, Dorien Clarisse, Delphine De Sutter, Claude Libert, +4 more
20citations -
Novel assays monitoring direct glucocorticoid receptor protein activity exhibit high predictive power for ligand activity on endogenous gene targets2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Estrogen and related hormone effects Open access
Laura Van Moortel, Jonathan Thommis, Brecht Maertens, An Staes, Dorien Clarisse, Delphine De Sutter, +5 more
3citations -
Multicentric Analytical and Inter-observer Comparability of Four Clinically Developed Programmed Death-ligand 1 Immunohistochemistry Assays in Advanced Clear-cell Renal Cell Carcinoma
Ulrich J. Sommer, Markus Eckstein, Johannes U Ammann, Till A. Braunschweig, Stephan Macher-Göppinger, Kristina Schwamborn, +10 more
13citations -
High-throughput competitive binding assay for targeting RNA tertiary structures with small molecules: application to pseudoknots and G-quadruplexes2025 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology RNA and protein synthesis mechanisms Open access
Sophie E.L. Wintermans, Jana S Hoffmann, Victor van Kuijk, Yelda Durmus, Mariska D. Tacoma, Indy Broekhuizen, +6 more
1citations -
High throughput identification of human monoclonal antibodies and heavy-chain-only antibodies to treat snakebite2024 Toxicon X article Biochemistry, Genetics and Molecular Biology Venomous Animal Envenomation and Studies Open access
Julien Slagboom, Wietse M. Schouten, Rien van HAPEREN, Mieke Veltman, Mátyás A. Bittenbinder, Freek J. Vonk, +4 more
7citations -
High-throughput competitive binding assay for targeting RNA with small molecules: discovery of new PreQ 1 riboswitch ligands2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology RNA and protein synthesis mechanisms Open access
Sophie E.L. Wintermans, Jana S Hoffmann, Mariska D. Tacoma, Indy Broekhuizen, Bjorn R. van Doodewaerd, Paul P. Geurink, +3 more
1citations -
Combining AlphaFold with Focused Virtual Library Design in the Development of Novel CCR2 and CCR5 Antagonists2025 Journal of Chemical Information and Modeling article Computer Science Computational Drug Discovery Methods Open access
Khaled Essa, Kian Noorman van der Dussen, Yao Yao, Bente T.M. Bleijs, Natalia V. Ortiz Zacarı́as, Laura H. Heitman, +4 more
1citations -
Reproducibility Archive for Explainable Machine Learning Integrating Quantum Mechanical Descriptors and Matched Molecular Pair Analysis for Scaffold-Generalizable Discovery of Soluble Epoxide Hydrolase Inhibitors.2026 Zenodo (CERN European Organization for Nuclear Research) dataset Computer Science Computational Drug Discovery Methods Open access
Dileep Kumar, Ajwin Joseph Martin, Maria Grishina, Mohd Shahbaaz
0citations