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A machine learning method for the discovery of minimum marker gene combinations for cell type identification from single-cell RNA sequencing2021 Genome Research preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Brian D. Aevermann, Yun Zhang, Mark A. Novotny, Mohamed Keshk, Trygve E. Bakken, Jeremy A. Miller, +4 more
96citations -
NS-Forest: A machine learning method for the objective identification of minimum marker gene combinations for cell type determination from single cell RNA sequencing2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Brian D. Aevermann, Yun Zhang, Mark A. Novotny, Trygve E. Bakken, Jeremy A. Miller, Rebecca D. Hodge, +3 more
12citations -
Sensitive and Specific Global Cell Surface N -Glycoproteomics Shows Profound Differences Between Glycosylation Sites and Subcellular Components2023 Analytical Chemistry article Biochemistry, Genetics and Molecular Biology Glycosylation and Glycoproteins Research Open access
Noortje de Haan, Ming Song, Oliver C. Grant, Zilu Ye, Fawzi Khoder‐Agha, Mikkel Koed Møller Aasted, +3 more
24citations -
Single cell RNA sequence analysis of human bone marrow samples reveals new targets for isolation of skeletal stem cells using DNA-coated gold nanoparticles2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Mesenchymal stem cell research Open access
Elloise Matthews, Stuart Lanham, Maria Eleni Kyriazi, Konstantina Alexaki, Afaf Helmy El-Sagheer, Tom Brown, +5 more
3citations -
Sex-Specific Isolation and Propagation of Human Premeiotic Fetal Germ Cells and Germ Cell-Like Cells2021 Cells article Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Swati Mishra, Jasin Taelman, Yolanda W. Chang, Annekatrien Boel, Petra De Sutter, Björn Heindryckx, +1 more
11citations -
T-cell receptors targeting distinct FLT3-D835Y neoantigens display differential reactivity toward acute myeloid leukemia_flow_cytometry_data_52026 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine Acute Myeloid Leukemia Research Open access
Nadine Struckman, M. Willy Honders, Georgia Koutsoumpli, Rob C. M. de Jong, Dyantha I. van der Lee, Michel G.D. Kester, +11 more
0citations -
T-cell receptors targeting distinct FLT3-D835Y neoantigens display differential reactivity toward acute myeloid leukemia_flow_cytometry_data_52026 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine Acute Myeloid Leukemia Research Open access
Nadine Struckman, M. Willy Honders, Georgia Koutsoumpli, Rob C. M. de Jong, Dyantha I. van der Lee, Michel G.D. Kester, +11 more
0citations -
Magnetic-Activated Cell Sorting Using Coiled-Coil Peptides: An Alternative Strategy for Isolating Cells with High Efficiency and Specificity2021 ACS Applied Materials & Interfaces article Engineering Characterization and Applications of Magnetic Nanoparticles Open access
Mengjie Shen, René C. L. Olsthoorn, Ye Zeng, Thomas Bakkum, Alexander Kros, Aimee L. Boyle
32citations -
Approaches to induce the maturation process of human induced pluripotent stem cell derived-endothelial cells to generate a robust model2024 PLoS ONE article Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access
Suzan de Boer, Sebastiaan N. J. Laan, Richard J. Dirven, Jeroen C.J. Eikenboom
6citations -
Small RNA Landscape of Platelet Dust: Platelet-Derived Extracellular Vesicles from Patients with Non-Small-Cell Lung Cancer2025 Non-Coding RNA article Biochemistry, Genetics and Molecular Biology Extracellular vesicles in disease Open access
Mafalda Antunes‐Ferreira, Ilias Glogovitis, Diogo Fortunato, Silvia D’Ambrosi, Mariona Colom Saborit, Galina T. Yahubyan, +5 more
1citations -
Multi-omic analyses in immune cell development with lessons learned from T cell development2023 Frontiers in Cell and Developmental Biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access
Martijn Cordes, Karin Pike‐Overzet, Erik B. van den Akker, Frank J. T. Staal, Kirsten Canté-Barrett
9citations -
Single-Cell Analysis of Refractory Celiac Disease Demonstrates Inter- and Intra-Patient Aberrant Cell Heterogeneity2022 Cellular and Molecular Gastroenterology and Hepatology article Medicine Celiac Disease Research and Management Open access
Tessa Dieckman, Mette Schreurs, Ahmed Essam Mahfouz, Yvonne Kooy–Winkelaar, Andra Neefjes‐Borst, Gerd Bouma, +1 more
18citations -
Single-Cell Transcriptomics Reveals Discrete Steps in Regulatory T Cell Development in the Human Thymus2021 The Journal of Immunology article Immunology and Microbiology T-cell and B-cell Immunology Open access
Florencia Morgana, Rianne Opstelten, Manon C. Slot, Andrew Mark Scott, René A. W. van Lier, Bianca Blom, +2 more
24citations -
High-dimensional single-cell analysis of human natural killer cell heterogeneity2024 Nature Immunology article Immunology and Microbiology Immune Cell Function and Interaction Open access
Lucas Rebuffet, Janine E. Melsen, Bertrand Escalière, Daniela Basurto-Lozada, Avinash Bhandoola, Niklas K. Björkström, +21 more
278citations -
Fusion of Bacterial Flagellin to a Dendritic Cell-Targeting αCD40 Antibody Construct Coupled With Viral or Leukemia-Specific Antigens Enhances Dendritic Cell Maturation and Activates Peptide-Responsive T Cells2020 Frontiers in Immunology article Immunology and Microbiology Immunotherapy and Immune Responses Open access cited by 2 patents
Saskia Schmitt, Siret Tahk, Alina Lohner, Gerulf Hänel, Andreas Maiser, Martina Hauke, +9 more
20citations -
Fasciola hepatica Fatty Acid Binding Protein 1 Modulates T cell Polarization by Promoting Dendritic Cell Thrombospondin-1 Secretion Without Affecting Metabolic Homeostasis in Obese Mice2022 Frontiers in Immunology article Immunology and Microbiology Parasites and Host Interactions Open access
Anna Zawistowska‐Deniziak, Joost M. Lambooij, Alicja Kalinowska, Thiago A. Patente, Maciej Łapiński, Hendrik J.P. van der Zande, +9 more
12citations -
Fasciola hepatica Fatty Acid Binding Protein 1 modulates T cell polarization by promoting dendritic cell thrombospondin-1 secretion without affecting metabolic homeostasis in obese mice2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Immunology and Microbiology Parasites and Host Interactions Open access
Anna Zawistowska‐Deniziak, Joost M. Lambooij, Alicja Kalinowska, Thiago A. Patente, Maciej Łapiński, Hendrik J.P. van der Zande, +9 more
0citations -
Screening of a Library of Recombinant Schistosoma mansoni Proteins With Sera From Murine and Human Controlled Infections Identifies Early Serological Markers2020 The Journal of Infectious Diseases article Immunology and Microbiology Parasites and Host Interactions Open access
Cécile Crosnier, Cornelis Hendrik Hokke, Anna Victoria Protasio, Cordelia Brandt, Gabriel Rinaldi, Marijke C. C. Langenberg, +6 more
14citations