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DistributedDesignOptimizer: A modular Python framework for Setup, Execution and Processing of Distributed Design Optimization2026 arXiv (Cornell University) preprint Computer Science Advanced Multi-Objective Optimization Algorithms Open access
Sebastian Ellmaier, A.J. de Wit, Akilesh Raveendran, Marc-Eric Vogt, Thomas Bäck, Anna V. Kononova
0citations -
bletl - A Python Package for Integrating Microbioreactors in the Design-Build-Test-Learn Cycle2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access
Michael Osthege, Niklas Tenhaef, Rebecca Zyla, Carolin Müller, Johannes Hemmerich, Wolfgang Wiechert, +2 more
3citations -
kMap.py: A Python program for simulation and data analysis in photoemission tomography2020 arXiv (Cornell University) preprint Materials Science Electron and X-Ray Spectroscopy Techniques Open access
Dominik Brandstetter, Xiaosheng Yang, Daniel Lüftner, Frank Stefan Tautz, Peter Puschnig
23citations -
specwizard: A Public Python Framework for Creating Synthetic Absorption Spectra from Hydrodynamical Simulations2026 arXiv (Cornell University) preprint Physics and Astronomy Galaxies: Formation, Evolution, Phenomena Open access
Andrés Arámburo-García, Tom Theuns, Joop Schaye, Alexey Boyarsky
0citations -
PeakPerformance - a tool for Bayesian inference-based fitting of LC-MS/MS peaks2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access
Jochen Nießer, Michael Osthege, Eric von Lieres, Wolfgang Wiechert, Stephan Noack
0citations -
DeepMed: A unified, modular pipeline for end-to-end deep learning in computational pathology2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access
Marko van Treeck, Didem Çifçi, Narmin Ghaffari Laleh, Oliver Lester Saldanha, Chiara Maria Lavinia Loeffler, Katherine Jane Hewitt, +9 more
13citations -
PyLabRobot: An Open-Source, Hardware Agnostic Interface for Liquid-Handling Robots and Accessories2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Decision Sciences Scientific Computing and Data Management Open access
Rick P. Wierenga, Stefan M. Golas, Wilson Ho, Connor W. Coley, Kevin M. Esvelt
0citations -
Rapid Augmentations for Time Series (RATS): A High-Performance Library for Time Series Augmentation2026 arXiv (Cornell University) preprint Computer Science Time Series Analysis and Forecasting Open access
Wadie Skaf, Felix Kern, Aryamaan Basu Roy, Tejas Pradhan, Roman Kalkreuth, Holger H. Hoos
0citations -
SALTED: a symmetry-adapted machine-learning program for predicting electron-densities in molecules and materials2026 arXiv (Cornell University) preprint Materials Science Machine Learning in Materials Science Open access
Zekun Lou, Alan M. Lewis, T. Bernhard, Lukas Seifert, Agustín Salcedo, Florian Kleemiss, +2 more
0citations -
Bridging HPC Communities through the Julia Programming Language2022 arXiv (Cornell University) preprint Computer Science Parallel Computing and Optimization Techniques Open access
Valentin Churavy, William F. Godoy, Carsten Bauer, Hendrik Ranocha, Michael Schlottke‐Lakemper, Ludovic Räss, +6 more
18citations -
Bayesian calibration, process modeling and uncertainty quantification in biotechnology2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Gaussian Processes and Bayesian Inference Open access
Laura M. Helleckes, Michael Osthege, Wolfgang Wiechert, Eric von Lieres, Marco Oldiges
4citations -
Integrated intra- and intercellular signaling knowledge for multicellular omics analysis2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access
Dénes Türei, Alberto Valdeolivas, Lejla Gul, Nicolàs Palacio‐Escat, Olga Ivanova, Attila Gábor, +3 more
36citations -
microbeSEG: A deep learning software tool with OMERO data management for efficient and accurate cell segmentation2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access
Tim Scherr, Johannes Seiffarth, Bastian Wollenhaupt, Oliver Neumann, Marcel P. Schilling, Dietrich Kohlheyer, +3 more
1citations