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Papers matching “single-cell spatial transcriptomics” 53

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Abstract 154: Single-cell spatial transcriptomics unravels cell states and ecosystems associated with clinical response to immunotherapy
2025 Cancer Research conference-abstract Medicine Cancer Immunotherapy and Biomarkers

Ziena Abdulrahman, Roderick C. Slieker, Daniel McGuire, Marij J.P. Welters, Mariëtte I.E. van Poelgeest, Sjoerd H. van der Burg

0

citations
Single-cell spatial transcriptomics unravels cell states and ecosystems associated with clinical response to immunotherapy
2025 Journal for ImmunoTherapy of Cancer article Medicine Cancer Immunotherapy and Biomarkers Open access

Ziena Abdulrahman, Roderick C. Slieker, Daniel McGuire, Marij J.P. Welters, Mariëtte I.E. van Poelgeest, Sjoerd H. van der Burg

23

citations
962 Single-cell spatial in situ transcriptomics unravels vulvar HSIL composition associated with complete response to therapeutic vaccination
2023 Regular and Young Investigator Award Abstracts conference-abstract Medicine Cervical Cancer and HPV Research Open access

Ziena Abdulrahman, Mariëtte I.E. van Poelgeest, Marij J.P. Welters, Sjoerd van der Burg

0

citations
161 Single-cell spatial in situ transcriptomics unravels vulvar HSIL composition associated with complete response to therapeutic vaccination
2022 Regular and Young Investigator Award Abstracts conference-abstract Medicine Cervical Cancer and HPV Research Open access

Ziena Abdulrahman, Mariette I. van Poelgeest, Marij JP Welters, Sjoerd H. van der Burg

0

citations
Single-cell and spatial transcriptomics resolve airway obliteration in bronchiolitis obliterans syndrome
2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Transplantation: Methods and Outcomes Open access

Jannik Ruwisch, Hande Yilmaz, Leonard Christian, Lavinia Neubert, Lena Maureen Leiber, Annalea Brüggemann, +29 more

0

citations
Immunogenomic, single-cell and spatial dissection of CD8 + T cell exhaustion reveals critical determinants of cancer immunotherapy
2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cancer Immunotherapy and Biomarkers Open access

Stefan Naulaerts, Daniel Borràs, Asier Antoranz, Julie Messiaen, Yannick Van Herck, Lendert Gelens, +15 more

7

citations
OS13.6.A A SINGLE-CELL AND SPATIAL ATLAS OF MENINGIOMA HETEROGENEITY ACROSS TUMOR CLASSES
2025 Neuro-Oncology conference-abstract Medicine Meningioma and schwannoma management Open access

Yufang Tang, Sybren L. N. Maas, Domenico Calafato, Jasim Kada Benotmane, Gleb D. Rukhovich, Z Ferdinand, +9 more

0

citations
Multi-omics single-cell spatial profiling of paediatric and adult acute myeloid leukaemia links spatial organization, molecular genetics and microenvironmental interactions
2025 Blood conference-abstract Medicine Acute Myeloid Leukemia Research

Merel van der Meulen, Joost B. Koedijk, Emma S. Pool, Eva M. Argiro, Marijn A. Vermeulen, Livius Penter, +12 more

0

citations
Single-cell spatial transcriptomic profiling defines a pathogenic inflammatory niche in chronic active multiple sclerosis lesions
2025 Immunity article Medicine Multiple Sclerosis Research Studies Open access

Ruoqing Feng, Lena Spieth, Lu Liu, Stefan A. Berghoff, Jonas Franz, Vini Tiwari, +17 more

31

citations
Spatial single-cell profiling of deeply matched extreme long-term surviving glioblastoma patients reveals a distinct immune and stem cell driven ecosystem
2024 Research Square preprint Medicine Glioma Diagnosis and Treatment Open access

Brecht Decraene, Asier Antoranz, Maxime Vanmechelen, Grégoire Coppens, Gautam Shankar, Lien Spans, +23 more

0

citations
Single-Cell Multiomics Analysis of Human Kidney Diseases
2025 Journal of the American Society of Nephrology article Medicine Renal Diseases and Glomerulopathies

Turgay Saritas, Charlotte Boys, Christoph Kuppe, Sidrah Maryam, Tore Bleckwehl, Debashish Mohanta, +11 more

0

citations
Multimodal single-cell profiling reveals crosstalk between macrophages and stromal cells in poor prognostic cholangiocarcinoma patients
2026 npj Precision Oncology article Medicine Cholangiocarcinoma and Gallbladder Cancer Studies Open access

Lara Rosaline Heij, Sikander Hayat, Konrad Reichel, Sidrah Maryam, Colm J. O’Rourke, Xiuxiang Tan, +27 more

3

citations
A single-cell multi-omic atlas of the human pancreas reveals potential for cellular plasticity across development, health, and disease
2026 Cell Metabolism article Medicine Pancreatic function and diabetes Open access

Elisabetta Mereu, Diego Balboa, Johannes Liebig, Aitor Gonzalez, Anna Martinez Casals, Mariya Mardamshina, +41 more

1

citations
A unified spatial & molecular atlas of anatomically restricted large B-cell lymphomas defines stereotyped cell ecosytems
2025 Blood conference-abstract Medicine Lymphoma Diagnosis and Treatment Open access

Troy Noordenbos, Ruben A. L. de Groen, Fleur A. de Groot, Tim J. A. Dekker, Lorraine M. de Haan, Esther J Kret, +8 more

0

citations
T-cell dysfunction in the glioblastoma microenvironment is mediated by myeloid cells releasing interleukin-10
2022 Nature Communications article Medicine Cancer Immunotherapy and Biomarkers Open access

Vidhya Madapusi Ravi, Nicolas Noel Neidert, Paulina Will, Kevin Joseph, Julian P. Maier, Jan Kückelhaus, +22 more

371

citations
The landscape of tertiary lymphoid structures in endometrial cancer revealed through harmonized multi-level transcriptomics
2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cancer Immunotherapy and Biomarkers Open access

Marta Requesens, Koen Brummel, Arkajyoti Bhattacharya, Feija Somefun, Nienke van Rooij, Annechien Plat, +10 more

0

citations
Abstract B081: In situ multi-modal characterization of pancreatic ductal adenocarcinoma reveals tumor cell identity as a defining factor of the surrounding microenvironment
2024 Cancer Research conference-abstract Medicine Pancreatic and Hepatic Oncology Research

Brian A. Rabe, Anna Lyubetskaya, Andrew J. Kavran, Yulong Bai, Hannah A. Pliner, Alba Font‐Tello, +25 more

0

citations
Spatial transcriptomics in paediatric and adult acute myeloid leukaemia: unravelling the bone marrow microenvironment
2025 Klinische Pädiatrie conference-paper Medicine Acute Myeloid Leukemia Research

Joost B. Koedijk, Livius Penter, Jana Ihlow, Marieke Griffioen, Wim de Jonge, Thanasis Margaritis, +3 more

0

citations
Spatial multi-omics reveals targetable immunosuppressive macrophage T-cell interactions in human AML bone marrow
2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Acute Myeloid Leukemia Research Open access

Merel van der Meulen, Emma S. Pool, Alicia Perzolli, Joost B. Koedijk, Eva M. Argiro, Li‐Ting Chen, +18 more

0

citations
D18-09 The Multiorgan Multicenter Spatial Transcriptomics Atlas Reveals Layered Granuloma Architecture and Cellular Programs Driving Sarcoidosis
2026 American Journal of Respiratory and Critical Care Medicine article Medicine Sarcoidosis and Beryllium Toxicity Research

Jannik Ruwisch, Leonard Christian, Stephan Traidl, J Dietrich, J-C Kamp, Janis Casper, +19 more

0

citations
Targeting immune–fibroblast cell communication in heart failure
2024 Nature article Medicine Cardiac Fibrosis and Remodeling Open access

Junedh Amrute, Xin Luo, Vinay R. Penna, Steven Hoseong Yang, Tracy Yamawaki, Sikander Hayat, +30 more

273

citations
Identification and Characterization of Neoplastic Cells in Keratin-Positive Giant Cell-Rich Tumors
2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Sarcoma Diagnosis and Treatment Open access

Maarten van der Linde, John S.A. Chrisinger, Elizabeth G. Demicco, Carina Anja Dehner, Gregory W. Charville, Inge H. Briaire‐de Bruijn, +6 more

0

citations
214 Abstract withdrawn
2024 Regular and Young Investigator Award Abstracts conference-abstract Medicine Bladder and Urothelial Cancer Treatments Open access

Benedikt S. Nilges, Paul Kießling, Mar MMuniz Moreno, Niklas Klümper, Markus Eckstein, Christoph Kuppe

0

citations
Comprehensive spatial profiling of the spleen in murine and human myelofibrosis identifies targetable immune-stromal interactions
2025 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine Myeloproliferative Neoplasms: Diagnosis and Treatment Open access

Bérénice Dugué, Pia Wanner, Mayra L. Ruiz Tejada Segura, Charles Dussiau, Rebekka K. Schneider

0

citations
Comprehensive spatial profiling of the spleen in murine and human myelofibrosis identifies targetable immune-stromal interactions
2025 Zenodo (CERN European Organization for Nuclear Research) dataset Medicine Myeloproliferative Neoplasms: Diagnosis and Treatment Open access

Bérénice Dugué, Wanner Pia, Mayra L. Ruiz Tejada Segura, Charles Dussiau, Rebekka K. Schneider

0

citations