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The Impact of Digital Histopathology Batch Effect on Deep Learning Model Accuracy and Bias2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access
Frederick Matthew Howard, James M. Dolezal, Sara E. Kochanny, Jefree J. Schulte, Heather Chen, Lara Rosaline Heij, +7 more
25citations -
Swarm learning for decentralized artificial intelligence in cancer histopathology2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access
Oliver Lester Saldanha, Philip Quirke, Nicholas Paul West, Jacqueline A. James, Maurice Bernard Loughrey, Heike Irmgard Grabsch, +20 more
22citations -
Benchmarking artificial intelligence methods for end-to-end computational pathology2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access
Narmin Ghaffari Laleh, Hannah Sophie Muti, Chiara Maria Lavinia Loeffler, Amelie Echle, Oliver Lester Saldanha, Faisal Mahmood, +17 more
15citations -
Adversarial attacks and adversarial robustness in computational pathology2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Adversarial Robustness in Machine Learning Open access
Narmin Ghaffari Laleh, Daniel Truhn, Gregory Patrick Veldhuizen, Tianyu Han, Marko van Treeck, Roman David Buelow, +5 more
14citations -
DeepMed: A unified, modular pipeline for end-to-end deep learning in computational pathology2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access
Marko van Treeck, Didem Çifçi, Narmin Ghaffari Laleh, Oliver Lester Saldanha, Chiara Maria Lavinia Loeffler, Katherine Jane Hewitt, +9 more
13citations -
A hybrid model combining evolutionary probability and machine learning leverages data-driven protein engineering2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Evolutionary Algorithms and Applications Open access
Alexander-Maurice Illig, Niklas E. Siedhoff, Ulrich Schwaneberg, Mehdi D. Davari
11citations -
Self-supervised deep learning for pan-cancer mutation prediction from histopathology2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access
Oliver Lester Saldanha, Chiara Maria Lavinia Loeffler, Jan Niehues, Marko van Treeck, Tobias Paul Seraphin, Katherine Jane Hewitt, +5 more
10citations -
Counterfactual Diffusion Models for Interpretable Explanations of Artificial Intelligence Models in Pathology2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access
Laura Žigutytė, Tim Lenz, Tianyu Han, Katherine Jane Hewitt, Nic Gabriel Reitsam, Sebastian Foersch, +5 more
7citations -
UnitRefine: A Community Toolbox for Automated Spike Sorting Curation2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Image Processing and 3D Reconstruction Open access
Anoushka Jain, Chris Halcrow, Alexander Kleinjohann, Federico Spurio, Severin Graff, Jüergen Gall, +3 more
6citations -
A blueprint for high affinity SARS-CoV-2 Mpro inhibitors from activity-based compound library screening guided by analysis of protein dynamics2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Computational Drug Discovery Methods Open access
Jonas Goßen, Simone Albani, Anton Hanke, Benjamin Philipp Joseph, Cathrine C. Bergh, Maria Kuzikov, +14 more
5citations -
Patient-specific Boolean models of signaling networks guide personalized treatments2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Computational Drug Discovery Methods Open access
Arnau Montagud, Jonas Béal, Luis Tobalina, Pauline Traynard, Vigneshwari Subramanian, Bence Szalai, +6 more
4citations -
Reusability and composability in process description maps: RAS-RAF-MEK-ERK signalling2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Computational Drug Discovery Methods Open access
Alexander Mazein, Adrien Rougny, Jonathan R. Karr, Julio Sáez-Rodríguez, Marek Ostaszewski, Reinhard Schneider
3citations -
MultiGML: Multimodal Graph Machine Learning for Prediction of Adverse Drug Events2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Computational Drug Discovery Methods Open access
Sophia Krix, Lauren Nicole DeLong, Sumit Madan, Daniel Domingo‐Fernándéz, Ashar Ahmad, Sheraz Gul, +2 more
3citations -
The future of artificial intelligence in digital pathology - results of a survey across stakeholder groups2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access
Céline N. Heinz, Amelie Echle, Sebastian Foersch, Andrey Bychkov, Jakob Nikolas Kather
1citations -
Validating a low-cost, open-source, locally manufactured workstation and computational pipeline for automated histopathology evaluation using deep learning2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access
Divya Choudhury, James M. Dolezal, Emma Dyer, Sara E. Kochanny, Siddi Ramesh, Frederick Matthew Howard, +6 more
1citations -
DEEP LEARNING APPROACH FOR RENAL CELL CARCINOMA DETECTION, SUBTYPING, AND GRADING2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science AI in cancer detection Open access
Maroof Abdul Aziz, Fatemeh Javadian, Sherin Susheel Mathew, Gopal Avinash, Johannes Stegmaier, Abin Jose
0citations
24 results