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Overcoming data scarcity in biomedical imaging with a foundational multi-task model2024 Nature Computational Science article Computer Science Domain Adaptation and Few-Shot Learning Open access
Till Nicke, Henning Höfener, Annkristin Lange, Dorit Merhof, Friedrich Feuerhake, Volkmar Schulz, +2 more
73citations -
Overcoming Data Scarcity in Biomedical Imaging with a Foundational Multi-Task Model2023 arXiv (Cornell University) preprint Computer Science Domain Adaptation and Few-Shot Learning Open access
Raphael Schäfer, Till Nicke, Henning Höfener, Annkristin Lange, Dorit Merhof, Friedrich Feuerhake, +3 more
2citations -
Schema-Driven Interoperability of Biomedical Data Resources for Improved Knowledge Dissemination and Reuse2026 Zenodo (CERN European Organization for Nuclear Research) article Computer Science Research Data Management Practices Open access
Egon Willighagen, Tooba Abbassi‐Daloii, Anna Niehues, Magnus Palmblad, Hailiang Mei, Eleni Mina, +2 more
2citations -
The FAIR Data Point Populator: collaborative FAIRification and population of FAIR Data Points2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Computer Science Research Data Management Practices Open access
Daphne Wijnbergen, Rajaram Kaliyaperumal, Luiz Olavo Bonino da Silva Santos, Barend Mons, Marco Roos, Eleni Mina
0citations -
The FAIR data point populator: collaborative FAIRification and population of FAIR data points2025 BMC Medical Informatics and Decision Making article Computer Science Research Data Management Practices Open access
Daphne Wijnbergen, Rajaram Kaliyaperumal, Luiz Olavo Bonino da Silva Santos, Barend Mons, Marco Roos, Eleni Mina
3citations -
FAIR GraphRAG: A Retrieval-Augmented Generation Approach for Semantic Data Analysis2025 IEEE International Conference on Knowledge Graph (ICKG) conference-paper Computer Science Research Data Management Practices Open access
Marlena Flüh, Soo-Yon Kim, Carolin Victoria Schneider, Sandra Geisler
1citations -
De-novo FAIRification via an Electronic Data Capture system by automated transformation of filled electronic Case Report Forms into machine-readable data2021 Journal of Biomedical Informatics article Computer Science Research Data Management Practices Open access
Martijn G. Kersloot, Annika Jacobsen, Karlijn H.J. Groenen, Bruna dos Santos Vieira, Rajaram Kaliyaperumal, Ameen Abu–Hanna, +5 more
27citations -
Data harmonization and federated learning for multi-cohort dementia research using the OMOP common data model: A Netherlands consortium of dementia cohorts case study2024 Journal of Biomedical Informatics article Computer Science Privacy-Preserving Technologies in Data Open access
Pedro Mateus, Justine E. F. Moonen, Magdalena Beran, Eva A. Jaarsma, Sophie M. van der Landen, Joost Heuvelink, +11 more
34citations -
De-identifying Clinical Texts using Biomed-Clinical BERTs and Comprehensive Risk Assessment2025 IEEE International Conference on Healthcare Informatics (ICHI) conference-paper Computer Science Privacy-Preserving Technologies in Data Open access
Dhivin Shaji, Lifeng Han, Warren Del-Pinto, Goran Nenadić, Suzan Verberne
1citations -
MedMNIST v2 - A large-scale lightweight benchmark for 2D and 3D biomedical image classification2023 Scientific Data data-paper Computer Science Advanced Neural Network Applications Open access cited by 1 patent
Jiancheng Yang, Rui Shi, Donglai Wei, Zequan Liu, Lin Zhao, Hanspeter Pfister, +1 more
1,037citations -
Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic2022 Journal of Biomedical Semantics article Computer Science Research Data Management Practices Open access
Núria Queralt-Rosiñach, Rajaram Kaliyaperumal, César H. Bernabé, Qinqin Long, Simone A. Joosten, Erik L.A. Flikkenschild, +3 more
68citations -
MedMNIST: 18x Standardized Datasets for 2D and 3D Biomedical Image Classification2024 Zenodo (CERN European Organization for Nuclear Research) dataset Computer Science Advanced Neural Network Applications Open access
Jiancheng Yang, Rui Shi, Donglai Wei, Zequan Liu, Lin Fan Zhao, Hanspeter Pfister, +1 more
0citations -
MedMNIST v2: A Large-Scale Lightweight Benchmark for 2D and 3D Biomedical Image Classification2022 Zenodo (CERN European Organization for Nuclear Research) dataset Computer Science Advanced Neural Network Applications Open access
Jiancheng Yang, Rui Shi, Donglai Wei, Zequan Liu, Lin Zhao, Hanspeter Pfister, +1 more
0citations -
MedMNIST v2: A Large-Scale Lightweight Benchmark for 2D and 3D Biomedical Image Classification2021 Zenodo (CERN European Organization for Nuclear Research) dataset Computer Science Advanced Neural Network Applications Open access
Jiancheng Yang, Rui Shi, Donglai Wei, Zequan Liu, Lin Zhao, Hanspeter Pfister, +1 more
2citations -
MedMNIST v2 -- A large-scale lightweight benchmark for 2D and 3D biomedical image classification2021 arXiv (Cornell University) preprint Computer Science Advanced Neural Network Applications Open access
Jiancheng Yang, Rui Shi, Donglai Wei, Zequan Liu, Lin Zhao, Hanspeter Pfister, +1 more
73citations -
Unconditional latent diffusion models memorize patient imaging data2025 Nature Biomedical Engineering article Computer Science Generative Adversarial Networks and Image Synthesis
Marvin Seyfarth, Isabelle Ayx, Theano Papavassiliu, Stefan Oswald Schoenberg, Robert Malte Siepmann, Fabian Christopher Laqua, +7 more
16citations -
The Influence of Human Annotation on CNN Performance for Anomaly Detection in ICU Data2025 Current Directions in Biomedical Engineering article Computer Science Anomaly Detection Techniques and Applications Open access
Lavinia Goldermann, Simon Fonck, Lena Sophie Olivier, Sebastian Johannes Fritsch, André Stollenwerk
0citations