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In-Depth Specificity Profiling of Endopeptidases Using Dedicated Mix-and-Split Synthetic Peptide Libraries and Mass Spectrometry2023 Analytical Chemistry article Chemistry Advanced Proteomics Techniques and Applications Open access
Bart Claushuis, Robert A. Cordfunke, Arnoud H. de Ru, Annemarie M. Otte, Hans C. van Leeuwen, Oleg I. Klychnikov, +4 more
4citations -
Peptides in Plasma, Urine, and Dialysate: Toward Unravelling Renal Peptide Handling2020 PROTEOMICS - CLINICAL APPLICATIONS article Chemistry Advanced Proteomics Techniques and Applications Open access
Tianlin He, Martin Pejchinοvski, William Mullen, Joachim Beige, Harald Mischak, Vera Jankowski
27citations -
Novel Formaldehyde-Induced Modifications of Lysine Residue Pairs in Peptides and Proteins: Identification and Relevance to Vaccine Development2020 Molecular Pharmaceutics article Chemistry Advanced Proteomics Techniques and Applications Open access cited by 1 patent
Thomas J. M. Michiels, Christian Schöneich, Martin Hamzink, Hugo D. Meiring, Gideon F. A. Kersten, Wim Jiskoot, +1 more
17citations -
Proteomics with Enhanced In-Source Fragmentation/Annotation: Applying XCMS-EISA Informatics and Q-MRM High-Sensitivity Quantification2021 Journal of the American Society for Mass Spectrometry article Chemistry Advanced Proteomics Techniques and Applications Open access cited by 1 patent
Jingchuan Xue, Rico J. E. Derks, Linh T. Hoang, Martin A. Giera, Gary E. Siuzdak
12citations -
Improving Identification of In-organello Protein-Protein Interactions Using an Affinity-enrichable, Isotopically Coded, and Mass Spectrometry-cleavable Chemical Crosslinker2020 Molecular & Cellular Proteomics article Chemistry Advanced Proteomics Techniques and Applications Open access
Karl A.T. Makepeace, Yassene Mohammed, Elena L. Rudashevskaya, Evgeniy V. Petrotchenko, F.‐Nora Vögtle, Chris Meisinger, +2 more
50citations -
Instrument-Software Synergy in Proteomics: Systematic Evaluation Across Mass Spectrometry Platforms, Search Engines, and Rescoring Methods2026 Zenodo (CERN European Organization for Nuclear Research) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
Sander Heyndrickx, Ralf Gabriels, Robbin Bouwmeester, Robbe Devreese, Arthur Declercq, Lennart Martens, +7 more
0citations -
Instrument-Software Synergy in Proteomics: Systematic Evaluation Across Mass Spectrometry Platforms, Search Engines, and Rescoring Methods2026 Zenodo (CERN European Organization for Nuclear Research) preprint Chemistry Advanced Proteomics Techniques and Applications Open access
Sander Heyndrickx, Ralf Gabriels, Robbin Bouwmeester, Robbe Devreese, Arthur Declercq, Lennart Martens, +7 more
0citations -
Insights from the First Phosphopeptide Challenge of the MS Resource Pillar of the HUPO Human Proteome Project2020 Journal of Proteome Research article Chemistry Advanced Proteomics Techniques and Applications Open access
Michael R. Hoopmann, Ulrike Kusebauch, Magnus Palmblad, Nuno Bandeira, David D. Shteynberg, Ling-jie He, +5 more
10citations -
Evaluation of Sibling and Twin Fragment Ions Improves the Structural Characterization of Proteins by Top-Down MALDI In-Source Decay Mass Spectrometry2020 Analytical Chemistry article Chemistry Mass Spectrometry Techniques and Applications Open access
Simone Nicolardi, David P. A. Kilgour, Natasja Dolezal, Jan Wouter Drijfhout, Manfred Wuhrer, Yuri E. M. van der Burgt
12citations -
Comparison of in-gel and in-solution proteolysis in the proteome profiling of organ perfusion solutions2023 Clinical Proteomics article Chemistry Advanced Proteomics Techniques and Applications Open access
Corinna Snashall, Chris W. Sutton, Maria Letizia Lo Faro, Carlo D. L. Ceresa, Rutger J. Ploeg, Sadr ul Shaheed
14citations -
dELTA-MS: A Mass Spectrometry-Based Proteomics Approach for Identifying ADP-Ribosylation Sites and Forms2025 Journal of Proteome Research article Chemistry Advanced Proteomics Techniques and Applications Open access
Isabel R. Uribe, Emily Zahn, Richard M. Searfoss, Han-Byeol Kim, Morgan Dasovich, Jim Voorneveld, +8 more
0citations -
Deciphering cytokine-driven ADP-ribosylation signaling networks via Af1521-based mass spectrometry analysis of labile Glu/Asp-linkages2026 Nature Communications article Chemistry Advanced Proteomics Techniques and Applications Open access
Sara Charlotte Buch-Larsen, Ivo Alexander Hendriks, Kyuto Tashiro, Jonas Damgaard Elsborg, Sergey Y. Vakhrushev, Jesper Velgaard Olsen, +4 more
6citations -
Instrument–Software Synergy in Proteomics: Systematic Evaluation across Mass Spectrometry Platforms, Search Engines, and Rescoring Methods2026 Journal of Proteome Research article Chemistry Advanced Proteomics Techniques and Applications Open access
Sander Heyndrickx, Robbin Bouwmeester, Arthur Declercq, Robbe Devreese, Magnus Palmblad, Wout Bittremieux, +7 more
0citations