linkml/schema-automator: v0.5.7-rc1

Zenodo (CERN European Organization for Nuclear Research)

Abstract

Release candidate cut to validate the coordinated release with linkml-map 0.5.4rc1 before either goes final. Downstream verification happens in dm-bip, which pins both packages exactly. Changes Bump linkml-map to 0.5.4rc1 (#220) 0.5.4 drops linkml-map's requires-python < 3.14 cap. That cap was why pip install schema-automator failed on Python 3.14 even though we advertise >=3.10 and test 3.14 in CI — our own CI only passed because uv sync installs from the lock, which doesn't enforce a dependency's Requires-Python. Downstream consumers resolve fresh, so they hit it. Verified with a fresh 3.14 resolve from a built wheel, no lock involved. Import SchemaBuilder from linkml_runtime (#221) linkml deprecated the linkml.utils.schema_builder re-export in 1.11 and removes it in 1.12, which our linkml < 2 pin would pick up. Migrated 8 modules and 4 tests. The two paths resolve to the same object today, so behaviour is unchanged, and no pin bump is needed — linkml_runtime.utils.schema_builder has carried the full API since 1.10.0, our declared floor. This is the PyPi package published from the mono-repo not the linkml/linkml_runtime repo that has been archived. Publish to PyPI on release published, not created (#222) Draft releases never fire the created activity type, and the GitHub UI saves new releases as drafts by default — so the draft-then-publish flow never triggered a PyPI publish. Also adds workflow_dispatch as a manual retry hatch. Notes This is a pre-release: it pins linkml-map >= 0.5.4rc1. Before the stable v0.5.7, that floor moves to >= 0.5.4 so a stable release doesn't advertise an rc.

Authors 17

1. Chris J Mungall

   Lawrence Berkeley National Laboratory

   Affiliation as printed

   Lawrence Berkeley National Laboratory

2. Mark Andrew Miller

   Lawrence Berkeley National Laboratory

   Affiliation as printed

   Lawrence Berkeley National Laboratory

3. Sierra Moxon

   Lawrence Berkeley National Laboratory

   Affiliation as printed

   Lawrence Berkeley National Lab

4. Corey Cox
5. Michael
6. Harshad
7. Patrick Golden

   University of North Carolina at Chapel Hill

   Affiliation as printed

   UNC Chapel Hill

8. Charles Tapley Hoyt Aachen

   RWTH Aachen University

   Affiliation as printed

   RWTH Aachen University

9. David Linke

   Leibniz Institute for Catalysis

   Affiliation as printed

   Leibniz Institute for Catalysis (LIKAT)

10. Nicolas Matentzoglu
    Affiliation as printed

    semanticly.ai

11. Nomi Harris

    Lawrence Berkeley National Laboratory

    Affiliation as printed

    Lawrence Berkeley National Laboratory

12. Sigfried Gold
13. Trish Whetzel
14. Yaroslav Halchenko

    Dartmouth College

    Affiliation as printed

    Dartmouth College, @dandi, @Debian, @DataLad, @neurodebian, @PyMVPA, @fail2ban

15. epstein6
16. N
17. wb0206