Code and Data for: Optogenetic Synchronization in Excitable Media by Archimedean Spiral Illumination

Zenodo (CERN European Organization for Nuclear Research)

Abstract

This dataset contains the source code, simulation data, and analysis scripts supporting the study "Optogenetic Synchronization in Excitable Media by Induced Archimedean Spiral". The repository includes: FORTRAN source code for simulating excitation dynamics in two- and three-dimensional excitable media under Archimedean spiral optogenetic illumination; Initial-condition datasets used to generate turbulent excitation states; Python scripts for processing simulation outputs and performing parameter scans; MATLAB scripts for reproducing the figures and quantitative analyses presented in the manuscript; Raw numerical data generated from the simulations; Documentation (README) describing the repository structure and usage instructions. The materials are organized to facilitate reproducibility of the numerical experiments and analyses reported in the associated publication. Researchers may use the provided code and data to reproduce the published results, perform further analyses, or extend the computational framework to related studies of wave synchronization and control in excitable media. This dataset is distributed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license. Please cite both the associated journal article and this Zenodo dataset when using these materials.

Authors 8

1. Qi-Hao Li

   Hangzhou Normal University

   Affiliation as printed

   Hangzhou Normal University

2. Song Han

   Hangzhou Normal University

   Affiliation as printed

   Hangzhou Normal University

3. Yin-Jie He

   Zhijiang College of Zhejiang University of Technology

   Affiliation as printed

   Zhijiang College of Zhejiang University of Technology

4. Y Zhao

   First Hospital of China Medical University

   Affiliation as printed

   First Hospital of China Medical University

5. Bing-Wei Li

   Hangzhou Normal University

   Affiliation as printed

   Hangzhou Normal University

6. Hans Dierckx Aachen

   Leiden University Medical Center

   Affiliation as printed

   Leiden University Medical Center

7. Alexander V. Panfilov

   Ghent University

   Affiliation as printed

   Ghent University

   World-Class Research Center "Digital biodesign and personalized healthcare"

8. Teng-Chao Li

   Hangzhou Normal University

   Affiliation as printed

   Hangzhou Normal University