nipy/nipype: 1.11.0

Zenodo (CERN European Organization for Nuclear Research)

Abstract

This release modernizes Nipype's legacy packaging. Key changes include better error propagation when utilizing run_without_submitting, proper quoting of paths with spaces, a fix for SPM v25 outputs, enhancements to dcm2niix, support for dynamic RAM estimation, and a revamped CI process for pre‑release tests. FIX: Propagate errors encountered when using run_without_submitting (https://github.com/nipy/nipype/pull/3745) FIX: Properly quote file paths with spaces (https://github.com/nipy/nipype/pull/3739) FIX: Catch OSError from getpass.getuser (https://github.com/nipy/nipype/pull/3728) FIX: SPM output type for version 25 (https://github.com/nipy/nipype/pull/3734) ENH: Add -w flag to dcm2niix interface (https://github.com/nipy/nipype/pull/3723) ENH: Dynamic RAM estimator (https://github.com/nipy/nipype/pull/3740) MAINT: Modernize packaging (https://github.com/nipy/nipype/pull/3742) CI: Split pre-release tests into cron job, open issues on failure (https://github.com/nipy/nipype/pull/3746)

Authors 97

1. Oscar Esteban

   Stanford University

   Affiliation as printed

   Department of Psychology, Stanford University

2. Christopher Johnson Markiewicz

   Stanford University

   Affiliation as printed

   Stanford University

3. Christopher Burns
4. Mathias Goncalves

   Massachusetts Institute of Technology

   Affiliation as printed

   MIT

5. Dorota Jarecka

   Massachusetts Institute of Technology

   Affiliation as printed

   MIT

6. Erik Ziegler
   Affiliation as printed

   Independent

7. Shoshana Berleant
8. David Gage Ellis

   University of Iowa

   Affiliation as printed

   The University of Iowa

9. Basile Pinsard
10. Cindee M. Madison
11. Michael Waskom

    Stanford University

    Affiliation as printed

    Department of Psychology, Stanford University

12. Michael Notter

    Centre d'Imagerie BioMedicale · University of Lausanne

    Affiliation as printed

    The Laboratory for Investigative Neurophysiology (The LINE), Department of Radiology and Department of Clinical Neurosciences, Lausanne, Switzerland; Center for Biomedical Imaging (CIBM), Lausanne, Switzerland

13. Daniel Clark
    Affiliation as printed

    Developer

14. Alexandre M. Savio

    TUM Klinikum · Technical University of Munich

    Affiliation as printed

    Klinikum rechts der Isar, TUM. ACPySS

15. Yaroslav O. Halchenko

    Dartmouth College

    Affiliation as printed

    Dartmouth College: Hanover, NH, United States

16. Dav Clark

    University of California, Berkeley

    Affiliation as printed

    UC Berkeley

17. Kesshi Jordan

    University of California, San Francisco

    Affiliation as printed

    University of California, San Francisco

18. Michael Dayan

    Mayo Clinic

    Affiliation as printed

    Mayo Clinic, Neurology, Rochester, MN, USA

19. Martin Norgaard

    Stanford University

    Affiliation as printed

    Department of Psychology, Stanford University

20. Fred Loney
21. Dimitri Papadopoulos Orfanos

    Commissariat à l'Énergie Atomique et aux Énergies Alternatives

    Affiliation as printed

    CEA

22. Taylor Salo

    Florida International University

    Affiliation as printed

    Florida International University

23. Blake E. Dewey

    Johns Hopkins University

    Affiliation as printed

    Department of Electrical and Computer Engineering, Johns Hopkins University

24. Salma Bougacha

    Commissariat à l'Énergie Atomique et aux Énergies Alternatives · Molecular Imaging Research Center

    Affiliation as printed

    Molecular Imaging Research Center, CEA, France

25. Anisha Keshavan

    University of California, San Francisco · University of California, Berkeley

    Affiliation as printed

    UC Berkeley - UCSF Graduate Program in Bioengineering

26. Benjamin Yvernault
27. Horea Christian

    University of Zurich · ETH Zurich · Institute for Biomedical Engineering

    Affiliation as printed

    Institute for Biomedical Engineering, ETH and University of Zurich

28. Carlo Hamalainen
29. Rastko Ćirić

    Stanford University

    Affiliation as printed

    Stanford University

30. Mathieu Dubois
31. Michael J. E. Joseph

    Centre for Addiction and Mental Health

    Affiliation as printed

    The Centre for Addiction and Mental Health

32. Ben Cipollini

    University of California San Diego

    Affiliation as printed

    UC San Diego

33. Steven Tilley

    Holland Bloorview Kids Rehabilitation Hospital

    Affiliation as printed

    Holland Bloorview Kids Rehabilitation Hospital

34. Matteo Visconti di Oleggio Castello

    Dartmouth College

    Affiliation as printed

    Dartmouth College

35. Alejandro De La Vega

    The University of Texas at Austin

    Affiliation as printed

    University of Texas at Austin

36. Jakub Roman Kaczmarzyk

    Massachusetts Institute of Technology

    Affiliation as printed

    MIT

37. Julia M. Huntenburg

    Max Planck Institute for Human Cognitive and Brain Sciences

    Affiliation as printed

    Research Group Neuroanatomy and Connectivity, Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany

38. James Doliver Kent

    University of Iowa

    Affiliation as printed

    Neuroscience Program, University of Iowa

39. Erin Benderoff

    Concordia University

    Affiliation as printed

    Concordia University

40. Drew Erickson
41. Maria de Fatima Dias
    Affiliation as printed

    CIBIT, UC

42. Brendan Moloney
43. Maurilio Genovese

    Azienda Ospedaliero-Universitaria di Modena

    Affiliation as printed

    Azienda Ospedaliero-Universitaria di Modena

44. Michael Hanke

    Otto-von-Guericke-Universität Magdeburg

    Affiliation as printed

    Otto-von-Guericke-University Magdeburg, Germany

45. Steve Giavasis

    Child Mind Institute

    Affiliation as printed

    Child Mind Institute

46. B. Nolan Nichols

    SRI International

    Affiliation as printed

    SRI International

47. Rosalia F. Tungaraza
48. Andrea Dell Orco

    Charité - Universitätsmedizin Berlin

    Affiliation as printed

    Charitè Universitätsmedizin Berlin, Germany

49. Caroline Frohlich

    Child Mind Institute

    Affiliation as printed

    Child Mind Institute

50. Demián Wassermann

    Institut national de recherche en sciences et technologies du numérique · Centre Inria d'Université Côte d'Azur

    Affiliation as printed

    Athena EPI, Inria Sophia-Antipolis

51. Gilles de Hollander

    Vrije Universiteit Amsterdam

    Affiliation as printed

    Vrije Universiteit, Amsterdam

52. Gal Kepler

    Tel Aviv University

    Affiliation as printed

    Sagol School of Neuroscience, Tel Aviv University

53. Serge Koudoro

    Indiana University

    Affiliation as printed

    Indiana University, IN, USA

54. Arman Eshaghi

    University College London

    Affiliation as printed

    University College London

55. Jarrod Millman
56. Matteo Mancini

    University College London

    Affiliation as printed

    University College London

57. Thomas Close

    The University of Sydney

    Affiliation as printed

    University of Sydney

58. Dylan M. Nielson

    National Institute of Mental Health · National Institute of Mental Health

    Affiliation as printed

    National Institute of Mental Health

59. Gael P. Varoquaux

    Institut national de recherche en sciences et technologies du numérique

    Affiliation as printed

    INRIA

60. L. Waller

    Charité - Universitätsmedizin Berlin

    Affiliation as printed

    Charite Universitatsmedizin Berlin, Germany

61. Aimi Watanabe
62. David Mordom
63. Jon Cluce

    Child Mind Institute

    Affiliation as printed

    Child Mind Institute

64. Jérémy Guillon

    Institut des Sciences Moléculaires · Institut du Cerveau · ARAMIS: Algorithmes, modèles et méthodes pour les images et les signaux du cerveau humain sain et pathologique

    Affiliation as printed

    ARAMIS LAB, Brain and Spine Institute (ICM), Paris, France

65. Timothy Robert‐Fitzgerald

    University of Pennsylvania

    Affiliation as printed

    Penn Statistics in Imaging and Visualization Endeavor, University of Pennsylvania

66. Andrey Chetverikov

    Radboud University Nijmegen · Donders Centre for Cognitive Neuroimaging · Donders Institute for Brain, Cognition and Behaviour

    Affiliation as printed

    Donders Institute for Brain, Cognition and Behavior, Center for Cognitive Neuroimaging

67. Ariel Rokem

    University of Washington

    Affiliation as printed

    The University of Washington eScience Institute

68. Benjamin T. Acland

    Washington University in St. Louis

    Affiliation as printed

    Washington University in St Louis

69. Fabio Bernardoni

    Technische Universität Dresden

    Affiliation as printed

    Division of Psychological and Social Medicine and Developmental Neuroscience, Faculty of Medicine, Technische Universität Dresden, Dresden, Germany

70. Jessica LeeAnn Forbes
71. ROSS MARKELLO

    Montreal Neurological Institute and Hospital

    Affiliation as printed

    Montreal Neurological Institute and Hospital

72. Ashley Gillman

    Commonwealth Scientific and Industrial Research Organisation · The University of Queensland · Australian e-Health Research Centre

    Affiliation as printed

    Australian eHealth Research Centre, Commonwealth Scientific and Industrial Research Organisation; University of Queensland

73. Xiang-Zhen Kong

    Beijing Normal University · Max Planck Institute for Psycholinguistics · State Key Laboratory of Cognitive Neuroscience and Learning

    Affiliation as printed

    State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China; Max Planck Institute for Psycholinguistics, Nijmegen, the Netherlands

74. Daniel Geisler

    Technische Universität Dresden

    Affiliation as printed

    Division of Psychological and Social Medicine and Developmental Neuroscience, Faculty of Medicine, Technische Universität Dresden, Dresden, Germany

75. John Salvatore
76. Lezlie Y. España

    Medical College of Wisconsin

    Affiliation as printed

    Medical College of Wisconsin

77. Alexandre Gramfort

    Centre National de la Recherche Scientifique · Université Paris-Saclay · Laboratoire Traitement et Communication de l’Information

    Affiliation as printed

    CNRS LTCI, Telecom ParisTech, Université Paris-Saclay

78. Anna Doll

    Bielefeld University

    Affiliation as printed

    Department of Psychology, University of Bielefeld, Bielefeld, Germany

79. Colin Buchanan
80. Elizabeth DuPré

    Montreal Neurological Institute and Hospital

    Affiliation as printed

    Montreal Neurological Institute and Hospital

81. Siqi Liu

    The University of Sydney

    Affiliation as printed

    The University of Sydney

82. Alexander Schaefer

    National University of Singapore

    Affiliation as printed

    National University Singapore

83. Jens Kleesiek

    University Hospital Heidelberg

    Affiliation as printed

    UniversityHospital Heidelberg, Germany

84. Lionel Butry

    BG University Hospital Bergmannsheil Bochum

    Affiliation as printed

    Department of Neurology, BG-University Hospital Bergmannsheil Bochum, Germany

85. Sharad Sikka

    Nathan Kline Institute for Psychiatric Research

    Affiliation as printed

    Nathan s Kline institute for psychiatric research

86. Yannick Schwartz
87. Ali Ghayoor

    University of Iowa

    Affiliation as printed

    The University of Iowa

88. Ghislain Vaillant

    Institut du Cerveau · ARAMIS: Algorithmes, modèles et méthodes pour les images et les signaux du cerveau humain sain et pathologique

    Affiliation as printed

    ARAMIS Lab, Paris Brain Institute

89. John A. Lee

    National Institute of Mental Health

    Affiliation as printed

    NIMH IRP

90. Aaron T. Mattfeld
91. Adam Richie-Halford

    University of Washington

    Affiliation as printed

    University of Washington

92. Franz Liem

    University of Zurich

    Affiliation as printed

    University of Zurich

93. Martin Felipe Perez-Guevara

    Inserm · Commissariat à l'Énergie Atomique et aux Énergies Alternatives · Cognitive Neuroimaging Lab

    Affiliation as printed

    Neurospin/Unicog/Inserm/CEA

94. Anibal Sólon Heinsfeld
95. Christian Haselgrove
96. Joke Durnez

    Institut national de recherche en sciences et technologies du numérique · Stanford University

    Affiliation as printed

    Department of Psychology, Stanford University; Parietal, INRIA

97. Leonie Lampe
    Affiliation as printed

    MPI CBS Leipzig, Germany