8-Info-BiologicalMaterial.tab

Recherche Data Gouv France

Abstract

This file contains the description of the genotypes. Briefly, all studied hybrids result from a F1 cross between the donor dent lines (parent 1) and one flint tester (parent 2, UH007 from University of Hohenheim). (Negro et al. 2018, https://doi.org/10.1101/476598). The file contains 14 columns: «Variety_ID», «AccessionID, «AccessionHolding»: Two accession identifiers (“_H” stands for “hybrids”) and the holding institution. «parent1», «parent1_synonym», «parent1_holding»: Donor dent lines with their identifiers, possible synonyms and the holding institution. «parent2», «parent2_holding»: Tester flint parent with its holding institution. «Code_ID»: code/lot number. «Panel_246»: Is this hybrid included in the 246 panel? Can be “yes” or “no”. «genetic_group»: Four genetic groups were identified using the ADMIXTURE software, namely “Iodent”, “Lancaster”, “Stiff Stalk” and diverse dent lines that do not belong to the former three heterotic groups (“Other”). «type»: the type of set in the genomic prediction study. It can be part of the cross validation set (CrossValidation), or the external test set (nG_ext). «holding», «Holding name»: Identifiers of the holing institutions. The Following columns have been added to comply to MIAPPE: MaterialSourceDOI: DOI of the Accession identifying this variety, MaterialSourceID: ID of the Accession identifying this variety, BiologicalMaterialID: ID used in the data files, Organism:NCBI Taxonomy identifier, Genus, Species, InfraspecificName: variety name

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