A

A brain-wide map of neural activity during complex behaviour

Nature, vol. 645, pp. 177–191

Abstract

. It is difficult to meet this challenge if different laboratories apply different analyses to different recordings in different regions during different behaviours. Here we report a comprehensive set of recordings from 621,733 neurons recorded with 699 Neuropixels probes across 139 mice in 12 laboratories. The data were obtained from mice performing a decision-making task with sensory, motor and cognitive components. The probes covered 279 brain areas in the left forebrain and midbrain and the right hindbrain and cerebellum. We provide an initial appraisal of this brain-wide map and assess how neural activity encodes key task variables. Representations of visual stimuli transiently appeared in classical visual areas after stimulus onset and then spread to ramp-like activity in a collection of midbrain and hindbrain regions that also encoded choices. Neural responses correlated with impending motor action almost everywhere in the brain. Responses to reward delivery and consumption were also widespread. This publicly available dataset represents a resource for understanding how computations distributed across and within brain areas drive behaviour.

Authors 96

  1. University of Washington

    Affiliation as printed

    Center for Computational Neuroscience, University of Washington, Seattle, WA, USA

  2. New York University

    Affiliation as printed

    Center for Neural Science, New York University, New York, NY, USA

    New York University, New York, NY, USA

  3. New York University

    Affiliation as printed

    Center for Neural Science, New York University, New York, NY, USA

    New York University, New York, NY, USA

  4. New York University

    Affiliation as printed

    Center for Neural Science, New York University, New York, NY, USA

  5. New York University

    Affiliation as printed

    Center for Neural Science, New York University, New York, NY, USA

    New York University, New York, NY, USA

  6. Centro Champalimaud

    Affiliation as printed

    Champalimaud Center for the Unknown, Lisboa, Portugal

  7. ISPA - Instituto Universitário · Centro Champalimaud · William James Center for Research

    Affiliation as printed

    Champalimaud Center for the Unknown, Lisboa, Portugal

    William James Center for Research, ISPA–Instituto Universitario, Lisbon, Portugal

  8. Champalimaud Foundation · Centro Champalimaud

    Affiliation as printed

    Champalimaud Center for the Unknown, Lisboa, Portugal

    Champalimaud Foundation, Lisboa, Portugal

  9. Centro Champalimaud

    Affiliation as printed

    Champalimaud Center for the Unknown, Lisboa, Portugal

  10. Centro Champalimaud

    Affiliation as printed

    Champalimaud Center for the Unknown, Lisboa, Portugal

  11. Champalimaud Foundation · Centro Champalimaud

    Affiliation as printed

    Champalimaud Center for the Unknown, Lisboa, Portugal

    Champalimaud Foundation, Lisboa, Portugal

  12. Champalimaud Foundation · Centro Champalimaud

    Affiliation as printed

    Champalimaud Center for the Unknown, Lisboa, Portugal

    Champalimaud Foundation, Lisboa, Portugal

  13. Centro Champalimaud

    Affiliation as printed

    Champalimaud Center for the Unknown, Lisboa, Portugal

  14. Champalimaud Foundation · Centro Champalimaud

    Affiliation as printed

    Champalimaud Center for the Unknown, Lisboa, Portugal

    Champalimaud Foundation, Lisboa, Portugal

  15. Champalimaud Foundation · Centro Champalimaud

    Affiliation as printed

    Champalimaud Center for the Unknown, Lisboa, Portugal

    Champalimaud Foundation, Lisboa, Portugal

  16. Centro Champalimaud

    Affiliation as printed

    Champalimaud Center for the Unknown, Lisboa, Portugal

  17. Centro Champalimaud

    Affiliation as printed

    Champalimaud Center for the Unknown, Lisboa, Portugal

  18. Champalimaud Foundation · Centro Champalimaud

    Affiliation as printed

    Champalimaud Center for the Unknown, Lisboa, Portugal

    Champalimaud Foundation, Lisboa, Portugal

  19. Champalimaud Foundation · Centro Champalimaud

    Affiliation as printed

    Champalimaud Center for the Unknown, Lisboa, Portugal

    Champalimaud Foundation, Lisboa, Portugal

  20. Leiden University

    Affiliation as printed

    Cognitive Psychology Unit, Institute of Psychology and Leiden Institute for Brain and Cognition, Leiden University, Leiden, The Netherlands

    Leiden University, Leiden, The Netherlands

  21. Cold Spring Harbor Laboratory

    Affiliation as printed

    Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA

  22. Cold Spring Harbor Laboratory

    Affiliation as printed

    Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA

  23. Cold Spring Harbor Laboratory

    Affiliation as printed

    Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA

  24. Cold Spring Harbor Laboratory

    Affiliation as printed

    Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA

    Watson School of Biological Science, Cold Spring Harbor, NY, USA

  25. University of California, Berkeley

    Affiliation as printed

    Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA

    University of California Berkeley, Berkeley, CA, USA

  26. University of California, Berkeley

    Affiliation as printed

    Department of Molecular and Cell Biology, University of California, Berkeley, CA, USA

    University of California Berkeley, Berkeley, CA, USA

  27. Stanford University

    Affiliation as printed

    Department of Applied Physics, Stanford University, Stanford, CA, USA

    Stanford University, Stanford, CA, USA

  28. Stanford University

    Affiliation as printed

    Department of Applied Physics, Stanford University, Stanford, CA, USA

  29. University of Geneva

    Affiliation as printed

    Department of Basic Neuroscience, University of Geneva, Geneva, Switzerland

  30. University of Geneva

    Affiliation as printed

    Department of Basic Neuroscience, University of Geneva, Geneva, Switzerland

    University of Geneva, Geneva, Switzerland

  31. University of Geneva

    Affiliation as printed

    Department of Basic Neuroscience, University of Geneva, Geneva, Switzerland

    University of Geneva, Geneva, Switzerland

  32. University of Geneva

    Affiliation as printed

    Department of Basic Neuroscience, University of Geneva, Geneva, Switzerland

    University of Geneva, Geneva, Switzerland

  33. University of Geneva

    Affiliation as printed

    Department of Basic Neuroscience, University of Geneva, Geneva, Switzerland

    University of Geneva, Geneva, Switzerland

  34. University of Geneva

    Affiliation as printed

    Department of Basic Neuroscience, University of Geneva, Geneva, Switzerland

    University of Geneva, Geneva, Switzerland

  35. University of Washington

    Affiliation as printed

    Department of Biological Structure, University of Washington, Seattle, WA, USA

  36. University of Washington

    Affiliation as printed

    Department of Biological Structure, University of Washington, Seattle, WA, USA

    University of Washington, Seattle, WA, USA

  37. University of Washington

    Affiliation as printed

    Department of Biological Structure, University of Washington, Seattle, WA, USA

  38. University of Washington

    Affiliation as printed

    Department of Biological Structure, University of Washington, Seattle, WA, USA

    University of Washington, Seattle, WA, USA

  39. University of Washington

    Affiliation as printed

    Department of Biological Structure, University of Washington, Seattle, WA, USA

    University of Washington, Seattle, WA, USA

  40. University of Washington

    Affiliation as printed

    Department of Biological Structure, University of Washington, Seattle, WA, USA

    University of Washington, Seattle, WA, USA

  41. University of Washington

    Affiliation as printed

    Department of Biological Structure, University of Washington, Seattle, WA, USA

  42. Massachusetts Institute of Technology

    Affiliation as printed

    Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA

    Massachusetts Institute of Technology, Cambridge, MA, USA

  43. Massachusetts Institute of Technology

    Affiliation as printed

    Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA

  44. Massachusetts Institute of Technology · Stanford University

    Affiliation as printed

    Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Cambridge, MA, USA

    Stanford University, Stanford, CA, USA

  45. University of California, Los Angeles

    Affiliation as printed

    Department of Neurobiology, University of California, Los Angeles, Los Angeles, CA, USA

    University of California Los Angeles, Los Angeles, CA, USA

  46. University of California, Los Angeles

    Affiliation as printed

    Department of Neurobiology, University of California, Los Angeles, Los Angeles, CA, USA

    University of California Los Angeles, Los Angeles, CA, USA

  47. University of California, Los Angeles

    Affiliation as printed

    Department of Neurobiology, University of California, Los Angeles, Los Angeles, CA, USA

    University of California Los Angeles, Los Angeles, CA, USA

  48. University of California, Los Angeles

    Affiliation as printed

    Department of Neurobiology, University of California, Los Angeles, Los Angeles, CA, USA

  49. University of Yamanashi

    Affiliation as printed

    Department of Physiology, University of Yamanashi, Yamanashi, Japan

  50. École Normale Supérieure - PSL

    Affiliation as printed

    Département D’études Cognitives, École Normale Supérieure, Paris, France

    Département D'études Cognitives, École Normale Supérieure, Paris, France

  51. École Normale Supérieure - PSL

    Affiliation as printed

    Département D’études Cognitives, École Normale Supérieure, Paris, France

    Département D'études Cognitives, École Normale Supérieure, Paris, France

  52. Gatsby Computational Neuroscience Unit · University College London

    Affiliation as printed

    Gatsby Computational Neuroscience Unit, University College London, London, UK

  53. Gatsby Computational Neuroscience Unit · University College London

    Affiliation as printed

    Gatsby Computational Neuroscience Unit, University College London, London, UK

  54. Gatsby Computational Neuroscience Unit · University College London

    Affiliation as printed

    Gatsby Computational Neuroscience Unit, University College London, London, UK

  55. Gatsby Computational Neuroscience Unit · University College London

    Affiliation as printed

    Gatsby Computational Neuroscience Unit, University College London, London, UK

  56. Gatsby Computational Neuroscience Unit · University College London

    Affiliation as printed

    Gatsby Computational Neuroscience Unit, University College London, London, UK

  57. Gatsby Computational Neuroscience Unit · University College London

    Affiliation as printed

    Gatsby Computational Neuroscience Unit, University College London, London, UK

  58. Gatsby Computational Neuroscience Unit · University College London

    Affiliation as printed

    Gatsby Computational Neuroscience Unit, University College London, London, UK

  59. UCL Queen Square Institute of Neurology · University College London

    Affiliation as printed

    Institute of Neurology, University College London, London, UK

  60. UCL Queen Square Institute of Neurology · University College London

    Affiliation as printed

    Institute of Neurology, University College London, London, UK

  61. UCL Queen Square Institute of Neurology · University College London

    Affiliation as printed

    Institute of Neurology, University College London, London, UK

    University College London, London, UK

  62. UCL Queen Square Institute of Neurology · University College London

    Affiliation as printed

    Institute of Neurology, University College London, London, UK

    University College London, London, UK

  63. UCL Queen Square Institute of Neurology · University College London

    Affiliation as printed

    Institute of Neurology, University College London, London, UK

  64. UCL Queen Square Institute of Neurology · University College London

    Affiliation as printed

    Institute of Neurology, University College London, London, UK

  65. UCL Queen Square Institute of Neurology · University College London

    Affiliation as printed

    Institute of Neurology, University College London, London, UK

  66. UCL Queen Square Institute of Neurology · University College London

    Affiliation as printed

    Institute of Neurology, University College London, London, UK

    University College London, London, UK

  67. UCL Queen Square Institute of Neurology · University College London

    Affiliation as printed

    Institute of Neurology, University College London, London, UK

    University College London, London, UK

  68. UCL Queen Square Institute of Neurology · University College London

    Affiliation as printed

    Institute of Neurology, University College London, London, UK

  69. University College London

    Affiliation as printed

    Institute of Opthalmology, University College London, London, UK

    University College London, London, UK

  70. University College London

    Affiliation as printed

    Institute of Opthalmology, University College London, London, UK

  71. University College London

    Affiliation as printed

    Institute of Opthalmology, University College London, London, UK

    University College London, London, UK

  72. Max Planck Institute for Biological Cybernetics · University of Tübingen

    Affiliation as printed

    Max Planck Institut, University of Tübingen, Tübingen, Germany

    Max Planck Institute for Biological Cybernetics, Tübingen, Germany

  73. Max Planck Institute for Biological Cybernetics · University of Tübingen

    Affiliation as printed

    Max Planck Institut, University of Tübingen, Tübingen, Germany

    Max Planck Institute for Biological Cybernetics, Tübingen, Germany

  74. Max Planck Institute for Biological Cybernetics · University of Tübingen

    Affiliation as printed

    Max Planck Institut, University of Tübingen, Tübingen, Germany

    Max Planck Institute for Biological Cybernetics, Tübingen, Germany

  75. Max Planck Institute for Biological Cybernetics

    Affiliation as printed

    Max Planck Institute for Biological Cybernetics, Tübingen, Germany

  76. Max Planck Institute for Biological Cybernetics

    Affiliation as printed

    Max Planck Institute for Biological Cybernetics, Tübingen, Germany

  77. Max Planck Institute for Biological Cybernetics

    Affiliation as printed

    Max Planck Institute for Biological Cybernetics, Tübingen, Germany

  78. Princeton University

    Affiliation as printed

    Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA

  79. Princeton University · Cold Spring Harbor Laboratory

    Affiliation as printed

    Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA

    Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA

  80. Princeton University

    Affiliation as printed

    Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA

  81. Princeton University

    Affiliation as printed

    Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA

  82. Princeton University

    Affiliation as printed

    Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA

    Princeton University, Princeton, NJ, USA

  83. Princeton University

    Affiliation as printed

    Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA

  84. Princeton University

    Affiliation as printed

    Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA

  85. Princeton University

    Affiliation as printed

    Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA

    Princeton University, Princeton, NJ, USA

  86. Princeton University

    Affiliation as printed

    Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA

  87. Princeton University

    Affiliation as printed

    Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA

    Princeton University, Princeton, NJ, USA

  88. Princeton University

    Affiliation as printed

    Princeton Neuroscience Institute, Princeton University, Princeton, NJ, USA

    Princeton University, Princeton, NJ, USA

  89. Sainsbury Wellcome Centre · University College London

    Affiliation as printed

    Sainsbury Wellcome Centre, University College London, London, UK

  90. Sainsbury Wellcome Centre · University College London

    Affiliation as printed

    Sainsbury Wellcome Centre, University College London, London, UK

  91. Sainsbury Wellcome Centre · University College London

    Affiliation as printed

    Sainsbury Wellcome Centre, University College London, London, UK

  92. Sainsbury Wellcome Centre · University College London

    Affiliation as printed

    Sainsbury Wellcome Centre, University College London, London, UK

  93. Sainsbury Wellcome Centre · University College London

    Affiliation as printed

    Sainsbury Wellcome Centre, University College London, London, UK

  94. Sainsbury Wellcome Centre · University College London

    Affiliation as printed

    Sainsbury Wellcome Centre, University College London, London, UK

  95. Sainsbury Wellcome Centre · University College London

    Affiliation as printed

    Sainsbury Wellcome Centre, University College London, London, UK

  96. Sainsbury Wellcome Centre · University College London

    Affiliation as printed

    Sainsbury Wellcome Centre, University College London, London, UK

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References 131