High resolution mapping of the tumor microenvironment using integrated single-cell, spatial and in situ analysis

• A single-cell multi-omic atlas of the human pancreas reveals potential for cellular plasticity across development, health, and disease

  2026 Cell Metabolism article Medicine Pancreatic function and diabetes Open access

  1

  citations
• Resolving the immune response across clonal cancer evolution in situ with Atera whole transcriptome profiling

  2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  1

  citations
• Conference report: airway mucosal sampling and immune analysis

  2026 Vaccine article Immunology and Microbiology Immune responses and vaccinations Open access

  0

  citations
• Next-generation kidney tissue analysis — spatial omics and digital pathology

  2026 Nature Reviews Nephrology review Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics

  1

  citations
• Fibrosis as the Engine of Kidney Functional Decline

  2026 Journal of the American Society of Nephrology article Medicine Chronic Kidney Disease and Diabetes Open access

  1

  citations
• From prediction to precision: Biomarker discovery and predictive modeling for personalized immune checkpoint blockade therapy

  2026 European Journal of Cancer article Medicine Cancer Immunotherapy and Biomarkers

  4

  citations
• PHLOWER leverages single-cell multimodal data to infer complex, multi-branching cell differentiation trajectories

  2025 Nature Methods article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  9

  citations
• Latent plasticity of the human pancreas across development, health, and disease

  2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Pancreatic function and diabetes Open access

  5

  citations
• GRIDGENE: Guided Region Identification based on Density of GENEs – a transcript density-based approach to characterize tissues by spatial transcriptomics

  2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  3

  citations
• PHLOWER - Single cell trajectory analysis using Hodge Decomposition

  2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations
• Fibrotic response to anti-CSF-1R therapy potentiates glioblastoma recurrence

  2024 Cancer Cell article Medicine Glioma Diagnosis and Treatment Open access

  82

  citations
• A multidimensional analysis reveals distinct immune phenotypes and the composition of immune aggregates in pediatric acute myeloid leukemia

  2024 Leukemia article Medicine Acute Myeloid Leukemia Research Open access

  20

  citations
• Spatial transcriptomic characterization of pathologic niches in IPF

  2024 Science Advances article Medicine Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis Open access cited by 1 patent

  106

  citations
• Application of spatial-omics to the classification of kidney biopsy samples in transplantation

  2024 Nature Reviews Nephrology review Medicine Renal Transplantation Outcomes and Treatments

  16

  citations
• A multidimensional analysis reveals distinct immune phenotypes and the composition of immune aggregates in pediatric acute myeloid leukemia

  2023 medRxiv preprint Medicine Acute Myeloid Leukemia Research Open access

  8

  citations

15 results