GTDB-Tk v2: memory friendly classification with the genome taxonomy database

• A roadmap to create FAIR collections of microbial strains

  2026 Nature Microbiology article Computer Science Research Data Management Practices

  0

  citations
• Isolation of genome-predicted Caldatribacterium (Atribacterota) reveals pervasive microbial cultivation problem due to folate precipitation

  2026 Nature Communications article Environmental Science Microbial Community Ecology and Physiology Open access

  0

  citations
• Fast and robust estimate of bacterial genus novelty using the percentage of conserved proteins with unique matches (POCPu)

  2025 PeerJ article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access

  4

  citations
• Isolation of two species of Caldatribacterium (Atribacterota) and the importance of folate for their culturability

  2025 Research Square preprint Environmental Science Microbial Community Ecology and Physiology Open access

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  citations
• Predicting rhizosphere-competence-related catabolic gene clusters in plant-associated bacteria with rhizoSMASH

  2025 Nature Communications article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access

  17

  citations
• Draft and complete genome sequences of 17 Streptococcus species

  2025 Microbiology Resource Announcements article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access

  0

  citations
• Comprehensive analysis of Enterococcus spp. from two European healthy infant cohorts shows stable genomic traits including antimicrobial resistance (AMR)

  2025 Gut Microbes article Biochemistry, Genetics and Molecular Biology Antibiotic Resistance in Bacteria Open access

  4

  citations
• Fast, flexible gene cluster family delineation with IGUA

  2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Microbial Natural Products and Biosynthesis Open access

  6

  citations
• In-cell discovery and characterization of a non-canonical bacterial protein translocation-folding complex

  2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Advanced Electron Microscopy Techniques and Applications Open access

  5

  citations
• Robust genome-based delineation of bacterial genera

  2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access

  1

  citations
• Wastewater biorefineries: exploring biological phosphorus removal and integrated recovery solutions

  2025 Current Opinion in Biotechnology review Environmental Science Wastewater Treatment and Nitrogen Removal

  12

  citations
• Unlocking the biosynthetic potential of Paenibacilli through a genus-wide exploration of gene clusters for secondary metabolite production

  2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Microbial Natural Products and Biosynthesis Open access

  5

  citations
• Expanding the genome information on Bacillales for biosynthetic gene cluster discovery

  2024 Scientific Data data-paper Medicine Microbial Natural Products and Biosynthesis Open access

  7

  citations
• Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota

  2024 Nature Communications article Environmental Science Microbial Community Ecology and Physiology Open access

  12

  citations
• The mOTUs online database provides web-accessible genomic context to taxonomic profiling of microbial communities

  2024 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access

  39

  citations
• Phylometagenomics of cycad coralloid roots reveals shared symbiotic signals

  2024 Microbial Genomics article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access

  7

  citations
• Long-term beneficial effect of faecal microbiota transplantation on colonisation of multidrug-resistant bacteria and resistome abundance in patients with recurrent Clostridioides difficile infection

  2024 Genome Medicine article Medicine Clostridium difficile and Clostridium perfringens research Open access

  33

  citations
• The gut microbiome of Baka forager-horticulturalists from Cameroon is optimized for wild plant foods

  2024 iScience article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  9

  citations
• Genome-guided isolation of Fervidibacter sacchari, an aerobic, hyperthermophilic polysaccharide-degrading specialist

  2024 Research Square preprint Environmental Science Microbial Community Ecology and Physiology Open access

  2

  citations
• Long-term beneficial effect of faecal microbiota transplantation on colonisation of multidrug-resistant bacteria and resistome abundance in patients with recurrent Clostridioides difficile infection

  2023 Qeios preprint Medicine Clostridium difficile and Clostridium perfringens research Open access

  1

  citations

20 results