anndata: Annotated data

• Trypanosoma cruzi cell atlas as a single-cell resource for understanding parasite population heterogeneity and differentiation

  2026 Nature Communications article Medicine Trypanosoma species research and implications Open access

  8

  citations
• Single-cell integration and multi-modal profiling reveals phenotypes and spatial organization of neutrophils in colorectal cancer

  2026 Cancer Cell article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  33

  citations
• Long-term in vitro expansion of a human fetal pancreas stem cell that generates all three pancreatic cell lineages

  2024 Cell article Medicine Pancreatic function and diabetes Open access

  32

  citations
• Single-cell multiome uncovers differences in glycogen metabolism underlying species-specific speed of development

  2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access

  1

  citations
• PICASO: Profiling Integrative Communities of Aggregated Single-cell Omics data

  2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  1

  citations
• Spatial transcriptomic characterization of pathologic niches in IPF

  2024 Science Advances article Medicine Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis Open access cited by 1 patent

  106

  citations
• Spatial Transcriptomic Characterization of Novel Pathologic Niches in IPF

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Interstitial Lung Diseases and Idiopathic Pulmonary Fibrosis Open access

  1

  citations
• Cell type matching across species using protein embeddings and transfer learning

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations

8 results