Bioconductor workflow for microbiome data analysis: from raw reads to community analyses

• Shift of bacterial and fungal communities upon soil amelioration is driven by carbon degradability of organic amendments

  2024 Discover Soil. article Agricultural and Biological Sciences Soil Carbon and Nitrogen Dynamics Open access

  12

  citations
• Dynamics, diversity, and roles of bacterial transmission modes during the first asexual life stages of the freshwater sponge Spongilla lacustris

  2024 Environmental Microbiome article Biochemistry, Genetics and Molecular Biology Marine Sponges and Natural Products Open access

  11

  citations
• Prokaryotic communities of the French Polynesian sponge Dactylospongia metachromia display a site-specific and stable diversity during an aquaculture trial

  2024 Antonie van Leeuwenhoek article Biochemistry, Genetics and Molecular Biology Marine Sponges and Natural Products Open access

  8

  citations
• Dynamics, diversity, and roles of bacterial transmission modes during the first asexual life stages of the freshwater sponge Spongilla lacustris

  2024 Research Square preprint Biochemistry, Genetics and Molecular Biology Marine Sponges and Natural Products Open access

  0

  citations
• Microbial Communities and Processes in Biofilters for Post-Treatment of Ozonated Wastewater Treatment Plant Effluent

  2022 SSRN Electronic Journal preprint Environmental Science Water Treatment and Disinfection Open access

  1

  citations
• Diversity and flexibility of algal symbiont community in globally distributed larger benthic foraminifera of the genus Amphistegina

  2021 BMC Microbiology article Biochemistry, Genetics and Molecular Biology Protist diversity and phylogeny Open access

  20

  citations
• Handling of spurious sequences affects the outcome of high-throughput 16S rRNA gene amplicon profiling

  2021 ISME Communications article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  181

  citations
• Cervicovaginal bacterial communities in reproductive-aged Tanzanian women withSchistosoma mansoni,Schistosoma haematobium, or without schistosome infection

  2021 The ISME Journal article Immunology and Microbiology Reproductive tract infections research Open access

  14

  citations
• Diversity and flexibility of algal endosymbionts in globally-distributed large benthic foraminifera

  2020 preprint Biochemistry, Genetics and Molecular Biology Protist diversity and phylogeny Open access

  2

  citations

9 results