Benchmarking of cell type deconvolution pipelines for transcriptomics data

• Tissue‐specific methylomic responses to a lifestyle intervention in older adults associate with metabolic and physiological health improvements

  2024 Aging Cell article Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access

  3

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• spacedeconv: deconvolution of tissue architecture from spatial transcriptomics

  2024 Research Square preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  4

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• A transcriptomic based deconvolution framework for assessing differentiation stages and drug responses of AML

  2024 npj Precision Oncology article Medicine Acute Myeloid Leukemia Research Open access

  14

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• CimpleG: finding simple CpG methylation signatures

  2023 Genome biology article Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access cited by 4 patents

  10

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• Single cell guided deconvolution of bulk transcriptomics recapitulates differentiation stages of acute myeloid leukemia and predicts drug response

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Acute Myeloid Leukemia Research Open access

  1

  citations
• CimpleG: Finding simple CpG methylation signatures

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access cited by 4 patents

  1

  citations
• Towards Personalized Treatment Strategies for Esophageal Adenocarcinoma; A Review on the Molecular Characterization of Esophageal Adenocarcinoma and Current Research Efforts on Individualized Curative Treatment Regimens

  2021 Cancers article Medicine Esophageal Cancer Research and Treatment Open access

  13

  citations
• Comparison of genome-wide gene expression profiling by RNA Sequencingversusmicroarray in bronchial biopsies of COPD patients before and after inhaled corticosteroid treatment: does it provide new insights?

  2021 ERJ Open Research article Medicine Chronic Obstructive Pulmonary Disease (COPD) Research Open access

  3

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8 results