Scater: pre-processing, quality control, normalization and visualization of single-cell RNA-seq data in R

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  2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Rheumatoid Arthritis Research and Therapies Open access

  0

  citations
• Cytotoxic T cell recognition of α-synuclein drives pathogenic immune responses in multiple system atrophy

  2026 Proceedings of the National Academy of Sciences article Medicine Parkinson's Disease Mechanisms and Treatments Open access

  1

  citations
• Integrative Learning of Disentangled Representations from Single-Cell RNA-Sequencing Datasets

  2026 Computational and Structural Biotechnology Journal article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  1

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• Metformin alters mitochondria-related metabolism and enhances human oligodendrocyte function

  2025 Nature Communications article Neuroscience Neurogenesis and neuroplasticity mechanisms Open access

  18

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• Carfilzomib-specific proteasome β5/β2 inhibition drives cardiotoxicity via remodeling of protein homeostasis and the renin-angiotensin-system

  2025 iScience article Medicine Chemotherapy-induced cardiotoxicity and mitigation Open access

  9

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• Understanding and reversing mammary tumor-driven reprogramming of myelopoiesis to reduce metastatic spread

  2025 Cancer Cell article Immunology and Microbiology Immune cells in cancer Open access

  65

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• Mapping the glial transcriptome in Huntington’s disease using snRNAseq: selective disruption of glial signatures across brain regions

  2024 Acta Neuropathologica Communications article Neuroscience Genetic Neurodegenerative Diseases Open access

  11

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• Integrative learning of disentangled representations from single-cell RNA-sequencing datasets

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations
• snRNA-seq analysis in multinucleated myogenic FSHD cells identifies heterogeneous FSHD transcriptome signatures associated with embryonic-like program activation and oxidative stress-induced apoptosis

  2023 Human Molecular Genetics article Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access

  15

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• Human pluripotent stem cell-derived inner ear organoids recapitulate otic development in vitro

  2023 Development article Neuroscience Hearing, Cochlea, Tinnitus, Genetics Open access

  30

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• Human pluripotent stem cells-derived inner ear organoids recapitulate otic development in vitro

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Hearing, Cochlea, Tinnitus, Genetics Open access

  1

  citations
• Intrathymic dendritic cell-biased precursors promote human T cell lineage specification through IRF8-driven transmembrane TNF

  2023 Nature Immunology article Immunology and Microbiology T-cell and B-cell Immunology Open access

  21

  citations
• Single-cell transcriptomics in bone marrow delineates CD56dimGranzymeK+ subset as intermediate stage in NK cell differentiation

  2022 Frontiers in Immunology article Immunology and Microbiology Immune Cell Function and Interaction Open access

  17

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• Mapping the glial transcriptome in Huntington’s disease using snRNAseq: Selective disruption of glial signatures across brain regions

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Genetic Neurodegenerative Diseases Open access

  1

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  2022 Science Immunology article Medicine Cancer Immunotherapy and Biomarkers

  42

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• Hand2 delineates mesothelium progenitors and is reactivated in mesothelioma

  2022 Nature Communications article Biochemistry, Genetics and Molecular Biology Developmental Biology and Gene Regulation Open access

  39

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• Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches

  2022 Cell article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 4 patents

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• scMoC: single-cell multi-omics clustering

  2022 Bioinformatics Advances article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  11

  citations

18 results