MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies

• Soil Pathobiome in Agroecosystems and Forests

  2026 Plant Pathology article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access

  0

  citations
• Benchmarking of shotgun sequencing depth reveals the potential and limitations of shallow metagenomics and strain-level analysis

  2026 Nature Microbiology article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access

  16

  citations
• Metagenome-based identification of functional traits of the black soldier fly gut microbiome associated with larval performance

  2025 BMC Microbiology article Agricultural and Biological Sciences Insect Utilization and Effects Open access

  7

  citations
• Microbiome‐Mediated Resistance of Wild Tomato to the Invasive Insect Prodiplosis longifila

  2025 Environmental Microbiology Reports article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access

  2

  citations
• Unveiling diversity and adaptations of the wild tomato Microbiome in their center of origin in the Ecuadorian Andes

  2025 Scientific Reports article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access

  1

  citations
• Benchmarking of shotgun sequencing depth highlights limitations of strain-level analysis and shallow metagenomics

  2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access

  5

  citations
• Genome-guided isolation of the hyperthermophilic aerobe Fervidibacter sacchari reveals conserved polysaccharide metabolism in the Armatimonadota

  2024 Nature Communications article Environmental Science Microbial Community Ecology and Physiology Open access

  12

  citations
• The mOTUs online database provides web-accessible genomic context to taxonomic profiling of microbial communities

  2024 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access

  39

  citations
• A pan-cancer analysis of the microbiome in metastatic cancer

  2024 Cell article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  219

  citations
• Phylometagenomics of cycad coralloid roots reveals shared symbiotic signals

  2024 Microbial Genomics article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access

  7

  citations
• The gut microbiome of Baka forager-horticulturalists from Cameroon is optimized for wild plant foods

  2024 iScience article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  9

  citations
• Genome-guided isolation of Fervidibacter sacchari, an aerobic, hyperthermophilic polysaccharide-degrading specialist

  2024 Research Square preprint Environmental Science Microbial Community Ecology and Physiology Open access

  2

  citations
• Shotgun Metagenomics-Guided Prediction Reveals the Metal Tolerance and Antibiotic Resistance of Microbes in Poly-Extreme Environments in the Danakil Depression, Afar Region

  2023 Antibiotics article Environmental Science Pharmaceutical and Antibiotic Environmental Impacts Open access

  6

  citations
• Disentangling the genetic basis of rhizosphere microbiome assembly in tomato

  2022 Nature Communications article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access

  165

  citations
• Disentangling the genetic basis of rhizosphere microbiome assembly in tomato

  2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access

  7

  citations
• Next steps after 15 stimulating years of human gut microbiome research

  2021 Microbial Biotechnology article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  26

  citations
• Integrating morphology and metagenomics to understand taxonomic variability of Amphisorus (Foraminifera, Miliolida) from Western Australia and Indonesia

  2021 PLoS ONE article Biochemistry, Genetics and Molecular Biology Protist diversity and phylogeny Open access

  22

  citations
• An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome

  2020 Cell Reports article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access cited by 3 patents

  140

  citations

18 results