Open-access bacterial population genomics: BIGSdb software, the PubMLST.org website and their applications

• Characterization of the clade 4 non-toxigenic C. difficile isolate L-NTCD03 carrying the cfr (B) gene

  2026 FEMS Microbes article Medicine Clostridium difficile and Clostridium perfringens research Open access

  0

  citations
• Discovery of IS1515 transposition into the Spn9802 fragment of Streptococcus pneumoniae and its implications for PCR-based diagnostic assays

  2025 European Journal of Clinical Microbiology & Infectious Diseases article Medicine Pneumonia and Respiratory Infections Open access

  0

  citations
• Streptococcus pneumoniae serotype 38 emerges as one of the dominant serotypes causing invasive pneumococcal disease in Germany and Poland, but not in the Netherlands

  2025 Journal of Infection article Medicine Pneumonia and Respiratory Infections Open access

  5

  citations
• A microbiological and genomic perspective of globally collected Escherichia coli from adults hospitalized with invasive E. coli disease

  2024 Journal of Antimicrobial Chemotherapy article Biochemistry, Genetics and Molecular Biology Escherichia coli research studies Open access

  17

  citations
• Clostridioides difficile in calves, cattle and humans from Dutch dairy farms: Predominance of PCR ribotype 695 (clade 5, sequence type 11) in cattle

  2024 One Health article Medicine Clostridium difficile and Clostridium perfringens research Open access

  8

  citations
• Clostridioides difficile in Calves, Cattle and Humans From Dutch Dairy Farms: Predominance of PCR Ribotype 695 (Clade 5, Sequence Type 11) in Cattle

  2024 SSRN Electronic Journal preprint Medicine Clostridium difficile and Clostridium perfringens research Open access

  0

  citations
• Molecular characterization of MRSA collected during national surveillance between 2008 and 2019 in the Netherlands

  2023 Communications Medicine article Medicine Antimicrobial Resistance in Staphylococcus Open access

  18

  citations
• Virulence and antimicrobial resistance of Shiga toxin-producing Escherichia coli from dairy goat and sheep farms in The Netherlands

  2023 Journal of Applied Microbiology article Biochemistry, Genetics and Molecular Biology Escherichia coli research studies Open access

  9

  citations
• Characterization of mobile genetic elements in multidrug-resistant Bacteroides fragilis isolates from different hospitals in the Netherlands

  2023 Anaerobe article Biochemistry, Genetics and Molecular Biology Antibiotic Resistance in Bacteria Open access

  12

  citations
• Carriage of three plasmids in a single human clinical isolate of Clostridioides difficile

  2022 Plasmid article Medicine Clostridium difficile and Clostridium perfringens research Open access

  4

  citations
• Sequence-Based Identification of Metronidazole-Resistant Clostridioides difficile Isolates

  2022 Emerging infectious diseases article Medicine Clostridium difficile and Clostridium perfringens research Open access

  13

  citations
• Clostridioides difficile PCR ribotype 151 is polyphyletic and includes pathogenic isolates from cryptic clade C-II with mono-toxin pathogenicity loci that can escape routine diagnostics

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Clostridium difficile and Clostridium perfringens research Open access

  1

  citations
• Carriage of three plasmids in a single human clinical isolate of Clostridioides difficile

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Clostridium difficile and Clostridium perfringens research Open access

  0

  citations
• Comparison of Whole-Genome Sequence-Based Methods and PCR Ribotyping for Subtyping of Clostridioides difficile

  2021 Journal of Clinical Microbiology article Medicine Clostridium difficile and Clostridium perfringens research Open access

  64

  citations
• Performance of Core Genome Multilocus Sequence Typing Compared to Capillary-Electrophoresis PCR Ribotyping and SNP Analysis of Clostridioides difficile

  2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Clostridium difficile and Clostridium perfringens research Open access

  1

  citations
• Changes in the incidence of invasive disease due to Streptococcus pneumoniae, Haemophilus influenzae, and Neisseria meningitidis during the COVID-19 pandemic in 26 countries and territories in the Invasive Respiratory Infection Surveillance Initiative: a prospective analysis of surveillance data

  2021 The Lancet Digital Health article Medicine Pneumonia and Respiratory Infections Open access

  557

  citations
• Carbon Source-Dependent Changes of the Structure of Streptococcus pneumoniae Capsular Polysaccharide with Serotype 6F

  2021 International Journal of Molecular Sciences article Medicine Pneumonia and Respiratory Infections Open access

  14

  citations
• The Invasive Respiratory Infection Surveillance (IRIS) Initiative reveals significant reductions in invasive bacterial infections during the COVID-19 pandemic

  2020 medRxiv preprint Mathematics COVID-19 epidemiological studies Open access

  9

  citations

18 results