Hierarchical Stochastic Neighbor Embedding

• GeneSurfer enables transcriptome-wide exploration and annotation of gene co-expression modules in 3D spatial transcriptomics data

  2025 iScience article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations
• GeneSurfer Enables Transcriptome-wide Exploration and Functional Annotation of Gene Co-expression Modules in 3D Spatial Transcriptomics Data

  2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  0

  citations
• Activated HLA-DR+CD38+ Effector Th1/17 Cells Distinguish Crohn’s Disease-associated Perianal Fistulas from Cryptoglandular Fistulas

  2024 Inflammatory Bowel Diseases article Biochemistry, Genetics and Molecular Biology Inflammatory Bowel Disease Open access

  6

  citations
• ManiVault: A Flexible and Extensible Visual Analytics Framework for High-Dimensional Data

  2023 IEEE Transactions on Visualization and Computer Graphics article Computer Science Data Visualization and Analytics Open access

  9

  citations
• Local and systemic immune profiles of human pancreatic ductal adenocarcinoma revealed by single-cell mass cytometry

  2022 Journal for ImmunoTherapy of Cancer article Medicine Pancreatic and Hepatic Oncology Research Open access

  26

  citations
• Deep Recursive Embedding for High-Dimensional Data

  2021 IEEE Transactions on Visualization and Computer Graphics article Computer Science Face and Expression Recognition Open access cited by 1 patent

  13

  citations
• Characterization of T cell responses to co-administered hookworm vaccine candidates Na-GST-1 and Na-APR-1 in healthy adults in Gabon

  2021 PLoS neglected tropical diseases article Immunology and Microbiology Parasites and Host Interactions Open access

  13

  citations
• On the ability to exploit signal fluctuations in pseudocontinuous arterial spin labeling for inferring the major flow territories from a traditional perfusion scan

  2021 NeuroImage article Medicine Advanced MRI Techniques and Applications Open access

  1

  citations
• Cytosplore-Transcriptomics: a scalable inter-active framework for single-cell RNA sequencing data analysis

  2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  2

  citations
• SCHNEL: scalable clustering of high dimensional single-cell data

  2020 Bioinformatics article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  9

  citations
• Unraveling the Complexity of the Cancer Microenvironment With Multidimensional Genomic and Cytometric Technologies

  2020 Frontiers in Oncology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 2 patents

  60

  citations
• SCHNEL: Scalable clustering of high dimensional single-cell data

  2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access

  2

  citations
• Eleven grand challenges in single-cell data science

  2020 Genome biology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 2 patents

  1,504

  citations
• Helminth infections drive heterogeneity in human type 2 and regulatory cells

  2020 Science Translational Medicine article Immunology and Microbiology Parasites and Host Interactions Open access

  62

  citations

14 results