BiGG Models: A platform for integrating, standardizing and sharing genome-scale models

• Yeast9: a consensus genome-scale metabolic model for S. cerevisiae curated by the community

  2024 Molecular Systems Biology article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access cited by 1 patent

  62

  citations
• Yeast9: A Consensus Yeast Metabolic Model Enables Quantitative Analysis of Cellular Metabolism By Incorporating Big Data

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access

  8

  citations
• Practical sampling of constraint-based models: Optimized thinning boosts CHRR performance

  2023 PLoS Computational Biology article Mathematics Markov Chains and Monte Carlo Methods Open access

  7

  citations
• Standard-GEM supports reproducible development of genome-scale metabolic models

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access

  21

  citations
• Engineering Pseudomonas putida KT2440 for chain length tailored free fatty acid and oleochemical production

  2022 Communications Biology article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access

  24

  citations
• CHRRT: boosting coordinate hit-and-run with rounding by thinning

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Mathematics Markov Chains and Monte Carlo Methods Open access

  1

  citations
• Computational Models for Clinical Applications in Personalized Medicine—Guidelines and Recommendations for Data Integration and Model Validation

  2022 Journal of Personalized Medicine article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  116

  citations
• Metabolite discovery: Biochemistry’s scientific driver

  2022 Cell Metabolism article Biochemistry, Genetics and Molecular Biology Metabolomics and Mass Spectrometry Studies Open access cited by 1 patent

  97

  citations
• PolyRound: polytope rounding for random sampling in metabolic networks

  2021 Bioinformatics article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access

  15

  citations
• Enzyme-Constrained Models and Omics Analysis of Streptomyces coelicolor Reveal Metabolic Changes that Enhance Heterologous Production

  2020 iScience article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access

  46

  citations
• MEMOTE for standardized genome-scale metabolic model testing

  2020 Nature Biotechnology article Biochemistry, Genetics and Molecular Biology Microbial Metabolic Engineering and Bioproduction Open access

  572

  citations

11 results