Ilastik: Interactive learning and segmentation toolkit

• In vivo expression of VCAM1 precedes nephron loss following kidney tubular necrosis

  2025 Science Advances article Medicine Acute Kidney Injury Research Open access

  6

  citations
• Decoding pathology: the role of computational pathology in research and diagnostics

  2024 Pflügers Archiv - European Journal of Physiology article Computer Science AI in cancer detection Open access

  21

  citations
• Computational modeling of cambium activity provides a regulatory framework for simulating radial plant growth

  2023 eLife article Agricultural and Biological Sciences Plant Molecular Biology Research Open access

  17

  citations
• Robust 3d Cell Segmentation: Extending The View Of Cellpose

  2022 Proceedings - International Conference on Image Processing conference-paper Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access cited by 1 patent

  39

  citations
• Using positional information to provide context for biological image analysis with MorphoGraphX 2.0

  2022 eLife article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access

  128

  citations
• High-content high-throughput imaging reveals distinct connections between mitochondrial morphology and functionality for OXPHOS complex I, III, and V inhibitors

  2022 Cell Biology and Toxicology article Biochemistry, Genetics and Molecular Biology Mitochondrial Function and Pathology Open access

  19

  citations
• Mass Cytometric Analysis of Early-Stage Mycosis Fungoides

  2022 Cells article Medicine Cutaneous lymphoproliferative disorders research Open access

  8

  citations
• 3D fluorescence microscopy data synthesis for segmentation and benchmarking

  2021 PLoS ONE article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access cited by 1 patent

  23

  citations
• Mapping the cellular response to electron transport chain inhibitors reveals selective signaling networks triggered by mitochondrial perturbation

  2021 Archives of Toxicology article Biochemistry, Genetics and Molecular Biology Mitochondrial Function and Pathology Open access

  18

  citations
• MorphoGraphX 2.0: Providing context for biological image analysis with positional information

  2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access

  10

  citations
• Iron loading is a prominent feature of activated microglia in Alzheimer’s disease patients

  2021 Acta Neuropathologica Communications article Neuroscience Neuroinflammation and Neurodegeneration Mechanisms Open access

  184

  citations
• Iron-loading is a prominent feature of activated microglia in Alzheimer’s disease patients

  2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Neuroscience Neuroinflammation and Neurodegeneration Mechanisms Open access

  8

  citations
• Mathematical Mirroring for Identification of Local Symmetry Centers in Microscopic Images Local Symmetry Detection in FIJI

  2020 Microscopy and Microanalysis article Biochemistry, Genetics and Molecular Biology Cell Image Analysis Techniques Open access

  1

  citations
• Unraveling the Complexity of the Cancer Microenvironment With Multidimensional Genomic and Cytometric Technologies

  2020 Frontiers in Oncology article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics Open access cited by 2 patents

  60

  citations
• Computational modelling of cambium activity provides a regulatory framework for simulating radial plant growth

  2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant Molecular Biology Research Open access

  3

  citations

15 results