Kraken: ultrafast metagenomic sequence classification using exact alignments

• Neighbours rewire plant–soil feedback patterns via reshaping root microbiomes

  2026 Nature Plants article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity

  2

  citations
• Metagenomic sequencing as a diagnostic tool for urine culture negative febrile urinary tract infection

  2026 Journal of Infection article Medicine Urinary Tract Infections Management Open access

  1

  citations
• Lineage-specific microbial protein prediction enables large-scale exploration of protein ecology within the human gut

  2025 Nature Communications article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access

  8

  citations
• Fecal microbiota transplantation: current challenges and future landscapes

  2024 Clinical Microbiology Reviews article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  352

  citations
• Similarities between Ixodes ricinus and Ixodes inopinatus genomes and horizontal gene transfer from their endosymbionts

  2024 Current Research in Parasitology and Vector-Borne Diseases article Immunology and Microbiology Vector-borne infectious diseases Open access

  5

  citations
• Virulence and antimicrobial resistance of Shiga toxin-producing Escherichia coli from dairy goat and sheep farms in The Netherlands

  2023 Journal of Applied Microbiology article Biochemistry, Genetics and Molecular Biology Escherichia coli research studies Open access

  9

  citations
• Sponge diversification in marine lakes: Implications for phylogeography and population genomic studies on sponges

  2023 Ecology and Evolution article Biochemistry, Genetics and Molecular Biology Genetic diversity and population structure Open access

  9

  citations
• Performance of Five Metagenomic Classifiers for Virus Pathogen Detection Using Respiratory Samples from a Clinical Cohort

  2022 Pathogens article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access

  14

  citations
• Performance of five metagenomic classifiers for virus pathogen detection using respiratory samples from a clinical cohort

  2022 medRxiv preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access

  4

  citations
• Paradox of complex diversity: Challenges in the diagnosis and management of bacterial keratitis

  2021 Progress in Retinal and Eye Research article Medicine Ocular Infections and Treatments

  62

  citations
• In-depth cell-free DNA sequencing reveals genomic landscape of Hodgkin’s lymphoma and facilitates ultrasensitive residual disease detection

  2021 Med article Medicine Lymphoma Diagnosis and Treatment Open access

  74

  citations
• Recommendations for the introduction of metagenomic next-generation sequencing in clinical virology, part II: bioinformatic analysis and reporting

  2021 Journal of Clinical Virology article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access

  88

  citations
• Exhaustive circulating tumor DNA sequencing reveals the genomic landscape of Hodgkin lymphoma and facilitates ultrasensitive detection of minimal residual disease

  2021 medRxiv preprint Medicine Lymphoma Diagnosis and Treatment Open access

  7

  citations
• Tracing species replacement in Iberian marbled newts

  2020 Ecology and Evolution article Biochemistry, Genetics and Molecular Biology Genetic diversity and population structure Open access

  13

  citations
• Phenotype-Agnostic Molecular Subtyping of Neurodegenerative Disorders: The Cincinnati Cohort Biomarker Program (CCBP)

  2020 Frontiers in Aging Neuroscience article Medicine Dementia and Cognitive Impairment Research Open access

  38

  citations
• Tracing species replacement in marbled newts

  2020 preprint Biochemistry, Genetics and Molecular Biology Genetic diversity and population structure Open access

  1

  citations

16 results