Strelka: accurate somatic small-variant calling from sequenced tumor–normal sample pairs

• Whole genome sequencing of endometrial cancer identifies novel subgroups, drivers, and actionable alterations

  2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access

  0

  citations
• Replication-associated mechanisms contribute to an increased CpG > TpG mutation burden in mismatch repair-deficient cancers

  2025 Genome Medicine article Medicine Genetic factors in colorectal cancer Open access

  3

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• Multi-omic profiling of follicular lymphoma reveals changes in tissue architecture and enhanced stromal remodeling in high-risk patients

  2024 Cancer Cell article Medicine Lymphoma Diagnosis and Treatment Open access

  72

  citations
• Clinical-genomic determinants of immune checkpoint blockade response in head and neck squamous cell carcinoma

  2023 Journal of Clinical Investigation article Medicine Cancer Immunotherapy and Biomarkers Open access

  31

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• Molecular Profile of MSH6-Associated Colorectal Carcinomas Shows Distinct Features From Other Lynch Syndrome–Associated Colorectal Carcinomas

  2023 Gastroenterology article Medicine Genetic factors in colorectal cancer Open access

  27

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• CD103 and CD39 coexpression identifies neoantigen-specific cytotoxic T cells in colorectal cancers with low mutation burden

  2023 Journal for ImmunoTherapy of Cancer article Medicine Cancer Immunotherapy and Biomarkers Open access

  29

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• Challenges in neoantigen-directed therapeutics

  2022 Cancer Cell article Medicine Cancer Immunotherapy and Biomarkers Open access cited by 1 patent

  143

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• Comprehensive characterization of pre- and post-treatment samples of breast cancer reveal potential mechanisms of chemotherapy resistance

  2022 npj Breast Cancer article Biochemistry, Genetics and Molecular Biology Breast Cancer Treatment Studies Open access

  41

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• Monoallelic NTHL1 Loss-of-Function Variants and Risk of Polyposis and Colorectal Cancer

  2020 Gastroenterology article Medicine Genetic factors in colorectal cancer Open access

  35

  citations

9 results