DELLY: structural variant discovery by integrated paired-end and split-read analysis

• Whole genome sequencing of endometrial cancer identifies novel subgroups, drivers, and actionable alterations

  2026 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics Open access

  0

  citations
• TONSL suppresses polymerase theta-dependent tandem duplications through chromatin-guided repair

  2026 Nature Communications article Biochemistry, Genetics and Molecular Biology DNA Repair Mechanisms Open access

  0

  citations
• A common food mutagen promotes intestinal carcinogenesis by multiple mechanisms in mouse models of Lynch syndrome

  2025 NAR Cancer article Medicine Genetic factors in colorectal cancer Open access

  1

  citations
• FAN1-mediated translesion synthesis and POLQ/HELQ-mediated end joining generate interstrand crosslink-induced mutations

  2025 Nature Communications article Biochemistry, Genetics and Molecular Biology DNA Repair Mechanisms Open access

  2

  citations
• FAN1-mediated translesion synthesis and POLQ/HELQ-mediated end joining generate interstrand crosslink-induced mutations

  2024 Research Square preprint Biochemistry, Genetics and Molecular Biology DNA Repair Mechanisms Open access

  0

  citations
• Pindel-TD: A Tandem Duplication Detector Based on A Pattern Growth Approach

  2024 Genomics Proteomics & Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomic variations and chromosomal abnormalities Open access

  2

  citations
• Haplotype-resolved assemblies and variant benchmark of a Chinese Quartet

  2023 Genome biology article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access

  12

  citations
• Pindel-TD: a tandem duplication detector based on a pattern growth approach

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomic variations and chromosomal abnormalities Open access

  0

  citations
• Reconstructing Phylogenetic Relationship in Bladder Cancer: A Methodological Overview

  2023 Methods in molecular biology book-chapter Biochemistry, Genetics and Molecular Biology Cancer Genomics and Diagnostics

  0

  citations
• Additional file 1 of Haplotype-resolved assemblies and variant benchmark of a Chinese Quartet

  2023 Figshare dataset Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access

  0

  citations
• Haplotype-resolved assemblies and variant benchmark of a Chinese Quartet

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access

  6

  citations
• Pollen sequencing reveals barriers and aberrant patterns of recombination in interspecific tomato hybrids

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Chromosomal and Genetic Variations Open access

  2

  citations
• Mako: A Graph-Based Pattern Growth Approach to Detect Complex Structural Variants

  2021 Genomics Proteomics & Bioinformatics article Biochemistry, Genetics and Molecular Biology Genomic variations and chromosomal abnormalities Open access

  9

  citations
• Familial Occurrence of Adult Granulosa Cell Tumors: Analysis of Whole-Genome Germline Variants

  2021 Cancers article Medicine Ovarian cancer diagnosis and treatment Open access

  5

  citations
• Transformed Canine and Murine Mesenchymal Stem Cells as a Model for Sarcoma with Complex Genomics

  2021 Cancers article Medicine Veterinary Oncology Research Open access

  11

  citations
• Mako: a graph-based pattern growth approach to detect complex structural variants

  2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomic variations and chromosomal abnormalities Open access

  1

  citations
• Loss of NF2 defines a genetic subgroup of non‐FOS ‐rearranged osteoblastoma

  2020 The Journal of Pathology Clinical Research article Medicine Bone Tumor Diagnosis and Treatments Open access cited by 1 patent

  16

  citations

17 results