ConsensusClusterPlus: a class discovery tool with confidence assessments and item tracking

• Spatial structures of tumor and immune cells shape outcomes in ER⁺HER2⁻ and triple-negative breast cancer

  2026 npj Breast Cancer article Biochemistry, Genetics and Molecular Biology Breast Cancer Treatment Studies Open access

  0

  citations
• Spatial Structure of Tumor and Immune Cells Shape Outcomes in ER⁺HER2⁻ and Triple-Negative Breast Cancer

  2026 Research Square preprint Biochemistry, Genetics and Molecular Biology Breast Cancer Treatment Studies Open access

  0

  citations
• Spatial Structure of Tumor and Immune Cells Shape Outcomes in ER⁺HER2⁻ and Triple-Negative Breast Cancer

  2025 medRxiv preprint Biochemistry, Genetics and Molecular Biology Breast Cancer Treatment Studies Open access

  0

  citations
• Bronchial gene expression clustering in COPD identifies a subgroup of patients with higher level of bronchial T-cells and accelerated lung function decline

  2025 medRxiv preprint Medicine Chronic Obstructive Pulmonary Disease (COPD) Research Open access

  0

  citations
• Stratification of Hepatocellular Carcinoma Using N6-Methyladenosine

  2025 Cancers article Biochemistry, Genetics and Molecular Biology RNA modifications and cancer Open access

  0

  citations
• Multiomic profiling of medulloblastoma reveals subtype-specific targetable alterations at the proteome and N-glycan level

  2024 Nature Communications article Medicine Glioma Diagnosis and Treatment Open access

  22

  citations
• An integrated tumor, immune and microbiome atlas of colon cancer

  2023 Nature Medicine article Medicine Cancer Immunotherapy and Biomarkers Open access

  215

  citations
• Multiomic profiling of medulloblastoma reveals subtype-specific targetable alterations at the proteome and N-glycan level

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Glioma Diagnosis and Treatment Open access

  1

  citations
• Integrating cell interaction with transcription factors to obtain a robust gene panel for prognostic prediction and therapies in cholangiocarcinoma

  2022 Frontiers in Genetics article Medicine Cholangiocarcinoma and Gallbladder Cancer Studies Open access

  3

  citations
• Serum levels of iCAF ‐derived osteoglycin predict favorable outcome in pancreatic cancer

  2022 International Journal of Cancer article Medicine Pancreatic and Hepatic Oncology Research Open access

  17

  citations
• The immune landscape of solid pediatric tumors

  2022 Journal of Experimental & Clinical Cancer Research article Medicine Cancer Immunotherapy and Biomarkers Open access

  39

  citations
• Integrating cell interaction with transcript factors to obtain a robust gene panel for prognostic prediction and therapies in cholangiocarcinoma

  2022 Research Square preprint Medicine Cholangiocarcinoma and Gallbladder Cancer Studies Open access

  0

  citations
• Analysis of the glyco-code in pancreatic ductal adenocarcinoma identifies glycan-mediated immune regulatory circuits

  2022 Communications Biology article Biochemistry, Genetics and Molecular Biology Glycosylation and Glycoproteins Research Open access

  37

  citations
• The Immune landscape of pediatric solid tumors

  2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Cancer Immunotherapy and Biomarkers Open access

  1

  citations
• Urinary peptides in heart failure: a link to molecular pathophysiology

  2021 European Journal of Heart Failure article Medicine Heart Failure Treatment and Management Open access cited by 1 patent

  65

  citations
• Ancestry-associated transcriptomic profiles of breast cancer in patients of African, Arab, and European ancestry

  2021 npj Breast Cancer article Biochemistry, Genetics and Molecular Biology Breast Cancer Treatment Studies Open access

  45

  citations
• Long-term epilepsy-associated tumors: transcriptional signatures reflect clinical course

  2020 Scientific Reports article Medicine Glioma Diagnosis and Treatment Open access

  22

  citations

17 results