TEtranscripts: a package for including transposable elements in differential expression analysis of RNA-seq datasets

• Lack of MDA5 delays hematopoietic aging by modulating inflammaging and proteostasis in mice

  2026 Nature Communications article Medicine Hematopoietic Stem Cell Transplantation Open access

  0

  citations
• Deciphering Complex Interactions Between LTR Retrotransposons and Three Papaver Species Using LTR_Stream

  2025 Genomics Proteomics & Bioinformatics article Agricultural and Biological Sciences Chromosomal and Genetic Variations Open access

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• DUX4 activates common and context-specific intergenic transcripts and isoforms

  2025 Science Advances article Biochemistry, Genetics and Molecular Biology Muscle Physiology and Disorders Open access

  3

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• Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi

  2023 Nature Communications article Agricultural and Biological Sciences Chromosomal and Genetic Variations Open access

  58

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• Exploration of nuclear body-enhanced sumoylation reveals that PML represses 2-cell features of embryonic stem cells

  2022 Nature Communications article Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access

  28

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• The soybean rust pathogen Phakopsora pachyrhizi displays transposable element proliferation that correlates with broad host-range adaptation on legumes

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Chromosomal and Genetic Variations Open access

  4

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• The role of MORC3 in silencing transposable elements in mouse embryonic stem cells

  2021 Epigenetics & Chromatin article Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access

  30

  citations
• Unbiased in vivo exploration of nuclear bodies-enhanced sumoylation reveals that PML orchestrates embryonic stem cell fate

  2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Pluripotent Stem Cells Research Open access

  1

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• Additional file 3 of The role of MORC3 in silencing transposable elements in mouse embryonic stem cells

  2021 Figshare dataset Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access

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• Additional file 4 of The role of MORC3 in silencing transposable elements in mouse embryonic stem cells

  2021 Figshare dataset Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access

  0

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• Additional file 6 of The role of MORC3 in silencing transposable elements in mouse embryonic stem cells

  2021 Figshare dataset Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access

  0

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• Additional file 2 of The role of MORC3 in silencing transposable elements in mouse embryonic stem cells

  2021 Figshare dataset Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access

  0

  citations
• Additional file 5 of The role of MORC3 in silencing transposable elements in mouse embryonic stem cells

  2021 Figshare dataset Biochemistry, Genetics and Molecular Biology Epigenetics and DNA Methylation Open access

  0

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• The HUSH complex is a gatekeeper of type I interferon through epigenetic regulation of LINE-1s

  2020 Nature Communications article Immunology and Microbiology interferon and immune responses Open access

  180

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