CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model

• LncRNA-BERT: an RNA language model for classifying coding and long non-coding RNA

  2026 Connection Science article Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access

  7

  citations
• SMAD3 and p300 complex scaffolding by long non-coding RNA LIMD1-AS1 promotes TGF-β-induced breast cancer cell plasticity

  2025 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access

  5

  citations
• Identification of a SNAI1 enhancer RNA that drives cancer cell plasticity

  2025 Nature Communications article Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access

  9

  citations
• LncRNA-BERT: An RNA Language Model for Classifying Coding and Long Non-Coding RNA

  2025 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Phylogenetic Studies Open access

  4

  citations
• Ovarian tumor cells gain competitive advantage by actively reducing the cellular fitness of microenvironment cells

  2024 Nature Biotechnology article Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access

  30

  citations
• The lncRNA LETS1 promotes TGF-β–induced EMT and cancer cell migration by transcriptionally activating a TβR1-stabilizing mechanism

  2023 Science Signaling article Biochemistry, Genetics and Molecular Biology TGF-β signaling in diseases Open access

  30

  citations
• LncRNA LITATS1 suppresses TGF‐β‐induced EMT and cancer cell plasticity by potentiating TβRI degradation

  2023 The EMBO Journal article Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access

  69

  citations
• A lncRNA identifies Irf8 enhancer element in negative feedback control of dendritic cell differentiation

  2023 eLife article Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access

  14

  citations
• HIF1α-AS1 is a DNA:DNA:RNA triplex-forming lncRNA interacting with the HUSH complex

  2022 Nature Communications article Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access

  48

  citations
• A lncRNA identifies IRF8 enhancer element in negative feedback control of dendritic cell differentiation

  2022 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Genomics and Chromatin Dynamics Open access

  2

  citations
• iFeatureOmega: an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets

  2022 Nucleic Acids Research article Biochemistry, Genetics and Molecular Biology Machine Learning in Bioinformatics Open access

  102

  citations
• HIF1α-AS1 is a DNA:DNA:RNA triplex-forming lncRNA interacting with the HUSH complex

  2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access

  0

  citations
• Sex-dimorphic genetic effects and novel loci for fasting glucose and insulin variability

  2021 Nature Communications article Biochemistry, Genetics and Molecular Biology Genetic Associations and Epidemiology Open access

  172

  citations
• Elucidating Epigenetic Regulation by Identifying Functional cis‐Acting Long Noncoding RNAs and Their Targets in Osteoarthritic Articular Cartilage

  2020 Arthritis & Rheumatology article Medicine Osteoarthritis Treatment and Mechanisms Open access

  35

  citations
• Aging-regulated anti-apoptotic long non-coding RNA Sarrah augments recovery from acute myocardial infarction

  2020 Nature Communications article Biochemistry, Genetics and Molecular Biology Cancer-related molecular mechanisms research Open access

  106

  citations

15 results