Ten Simple Rules for Reproducible Computational Research

• Design and evaluation of semantically-valid negative samples integration techniques for scalable semi-automated drug repurposing prediction pipelines in rare disease research

  2026 BMC Bioinformatics article Computer Science Computational Drug Discovery Methods Open access

  2

  citations
• A Guide to Bayesian Optimization in Bioprocess Engineering

  2026 Biotechnology and Bioengineering article Decision Sciences Optimal Experimental Design Methods Open access

  14

  citations
• Advancing Cardiovascular Research With Single-Cell and Spatial Transcriptomics

  2026 Circulation Research article Biochemistry, Genetics and Molecular Biology Single-cell and spatial transcriptomics

  12

  citations
• Ten quick tips for building FAIR workflows

  2023 PLoS Computational Biology article Decision Sciences Scientific Computing and Data Management Open access

  42

  citations
• Ten simple rules for initial data analysis

  2022 PLoS Computational Biology article Decision Sciences Scientific Computing and Data Management Open access

  41

  citations
• Keeping modelling notebooks with TRACE: Good for you and good for environmental research and management support

  2020 Environmental Modelling & Software article Decision Sciences Scientific Computing and Data Management Open access

  67

  citations
• TRACTUS: Understanding and Supporting Source Code Experimentation in Hypothesis-Driven Data Science

  2020 CHI Conference on Human Factors in Computing Systems conference-paper Computer Science Software Engineering Research cited by 2 patents

  14

  citations

7 results