Microbial interactions: from networks to models

• What Co‐Occurrence Networks Can and Cannot Tell Us About Soil Ecology

  2026 European Journal of Soil Science article Environmental Science Microbial Community Ecology and Physiology

  1

  citations
• Does soil inoculation truly steer the composition of native soil communities?

  2026 Soil Biology and Biochemistry article Agricultural and Biological Sciences Soil Carbon and Nitrogen Dynamics

  1

  citations
• Introduction to correlation networks: Interdisciplinary approaches beyond thresholding

  2025 Physics Reports article Physics and Astronomy Complex Network Analysis Techniques Open access

  26

  citations
• Land use intensity differently affects soil microbial functional communities in arable fields

  2024 Applied Soil Ecology article Agricultural and Biological Sciences Soil Carbon and Nitrogen Dynamics Open access

  7

  citations
• Dynamics of Gut Microbiota After Fecal Microbiota Transplantation in Ulcerative Colitis: Success Linked to Control of Prevotellaceae

  2024 Journal of Crohn s and Colitis article Biochemistry, Genetics and Molecular Biology Inflammatory Bowel Disease Open access

  20

  citations
• Disentangling the factors defining Bacillus subtilis group species abundance in natural soils

  2024 Environmental Microbiology article Environmental Science Microbial Community Ecology and Physiology Open access

  6

  citations
• Disentangling the potential factors defining Bacillus subtilis abundance in natural soils

  2024 bioRxiv (Cold Spring Harbor Laboratory) preprint Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access

  0

  citations
• Heterogeneous associations of gut microbiota with Crohn’s disease activity

  2023 Gut Microbes article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  19

  citations
• Wavelet clustering analysis as a tool for characterizing community structure in the human microbiome

  2023 Scientific Reports article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  5

  citations
• Species abundance correlations carry limited information about microbial network interactions

  2022 PLoS Computational Biology article Environmental Science Microbial Community Ecology and Physiology Open access

  33

  citations
• Toward FAIR Representations of Microbial Interactions

  2022 mSystems article Computer Science Research Data Management Practices Open access

  18

  citations
• A multiscale spatiotemporal model including a switch from aerobic to anaerobic metabolism reproduces succession in the early infant gut microbiota

  2021 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  2

  citations
• Beyond Plant Microbiome Composition: Exploiting Microbial Functions and Plant Traits via Integrated Approaches

  2020 Frontiers in Bioengineering and Biotechnology article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access

  82

  citations
• Microbial macroecology: In search of mechanisms governing microbial biogeographic patterns

  2020 Global Ecology and Biogeography article Environmental Science Microbial Community Ecology and Physiology

  103

  citations
• Multitrophic interactions in the rhizosphere microbiome of wheat: from bacteria and fungi to protists

  2020 FEMS Microbiology Ecology article Agricultural and Biological Sciences Plant-Microbe Interactions and Immunity Open access

  136

  citations

15 results