PathVisio 3: An Extendable Pathway Analysis Toolbox

• FAIR in practice: minimum metadata schema for bioinformatics analytics by machines

  2026 Journal of Biomedical Semantics article Computer Science Research Data Management Practices Open access

  0

  citations
• A collaborative network analysis for the interpretation of transcriptomics data in Huntington’s disease

  2025 Scientific Reports article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  1

  citations
• Exploring pathway interactions to detect molecular mechanisms of disease: 22q11.2 deletion syndrome

  2023 Orphanet Journal of Rare Diseases article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  2

  citations
• Collaborative network analysis for the interpretation of transcriptomics data in rare diseases, an application to Huntington’s disease

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  0

  citations
• Transcriptional landscape of mitochondrial electron transport chain inhibition in renal cells

  2023 Cell Biology and Toxicology article Biochemistry, Genetics and Molecular Biology Mitochondrial Function and Pathology Open access

  8

  citations
• Specificity of the innate immune responses to different classes of non-tuberculous mycobacteria

  2023 Frontiers in Immunology article Medicine Mycobacterium research and diagnosis Open access

  15

  citations
• Exploring Pathway Interactions to Detect Molecular Mechanisms of Disease: 22q11.2 Deletion Syndrome

  2022 Research Square preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  1

  citations
• COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

  2021 Molecular Systems Biology article Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  105

  citations
• New insights into the mechanisms underlying 5-fluorouracil-induced intestinal toxicity based on transcriptomic and metabolomic responses in human intestinal organoids

  2021 Archives of Toxicology article Medicine Colorectal Cancer Treatments and Studies Open access

  57

  citations
• COVID-19 Disease Map, a computational knowledge repository of SARS-CoV-2 virus-host interaction mechanisms

  2020 bioRxiv (Cold Spring Harbor Laboratory) preprint Biochemistry, Genetics and Molecular Biology Bioinformatics and Genomic Networks Open access

  11

  citations
• BioHackathon 2015: Semantics of data for life sciences and reproducible research

  2020 F1000Research article Computer Science Research Data Management Practices Open access

  6

  citations

11 results