Sparse and Compositionally Robust Inference of Microbial Ecological Networks

• What Co‐Occurrence Networks Can and Cannot Tell Us About Soil Ecology

  2026 European Journal of Soil Science article Environmental Science Microbial Community Ecology and Physiology

  1

  citations
• A realistic benchmark for differential abundance testing and confounder adjustment in human microbiome studies

  2024 Genome biology article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  44

  citations
• Fungal and bacterial gut microbiota differ between Clostridioides difficile colonization and infection

  2023 Microbiome Research Reports article Medicine Clostridium difficile and Clostridium perfringens research Open access

  8

  citations
• Fungal-bacterial gut microbiota interactions in patients with Clostridioides difficile colonisation and infection

  2023 bioRxiv (Cold Spring Harbor Laboratory) preprint Medicine Clostridium difficile and Clostridium perfringens research Open access

  0

  citations
• Wavelet clustering analysis as a tool for characterizing community structure in the human microbiome

  2023 Scientific Reports article Biochemistry, Genetics and Molecular Biology Gut microbiota and health Open access

  5

  citations
• Bacterial and fungal co-occurrence patterns in agricultural soils amended with compost and bokashi

  2022 Soil Biology and Biochemistry article Agricultural and Biological Sciences Soil Carbon and Nitrogen Dynamics Open access

  36

  citations
• Species abundance correlations carry limited information about microbial network interactions

  2022 PLoS Computational Biology article Environmental Science Microbial Community Ecology and Physiology Open access

  33

  citations
• Soil inoculum identity and rate jointly steer microbiomes and plant communities in the field

  2022 ISME Communications article Agricultural and Biological Sciences Soil Carbon and Nitrogen Dynamics Open access

  32

  citations
• Best practices in metabarcoding of fungi: From experimental design to results

  2022 Molecular Ecology article Agricultural and Biological Sciences Mycorrhizal Fungi and Plant Interactions Open access

  345

  citations
• Soil depth matters: shift in composition and inter-kingdom co-occurrence patterns of microorganisms in forest soils

  2021 FEMS Microbiology Ecology article Environmental Science Microbial Community Ecology and Physiology Open access

  119

  citations
• The Bacterial Gut Microbiota of Adult Patients Infected, Colonized or Noncolonized by Clostridioides difficile

  2020 Microorganisms article Medicine Clostridium difficile and Clostridium perfringens research Open access cited by 1 patent

  46

  citations

11 results